Sphingobacterium sp. JUb78

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Sphingobacterium

Description

Sphingobacterium sp. JUb78 is characterized as a rod-shaped bacterium. It has a single replicon, which indicates that its genetic material is contained within one circular chromosome. This trait is significant in the context of microbial genetics, as it may influence the organism's replication and stability of its genome. The accession number for Sphingobacterium sp. JUb78 is SLYX00000000.1, which serves as a reference for its genomic data in biological databases. This accession allows researchers to access specific genomic information pertinent to this strain, facilitating studies that explore its biological functions and ecological roles. In terms of ecological insights, Sphingobacterium species are often found in various environments, including soil and aquatic systems, where they play a role in the degradation of organic matter. Their ability to break down complex substrates can contribute to nutrient cycling in ecosystems. Thus, understanding the traits of Sphingobacterium sp. JUb78 may provide valuable information regarding its potential applications in bioremediation or other ecological processes, highlighting the importance of such microorganisms in maintaining environmental health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusSphingobacterium
SpeciesSphingobacterium sp. JUb78
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Sphingobacterium sp. JUb78
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobacterium sp. JUb78 Ga0304819_122, whole genome shotgun

Gene Summary

Adenine Count

2007996 bp

Thymine Count

1965051 bp

Guanine Count

1097350 bp

Cytosine Count

1162608 bp

Genome Length

6233306 bp

Protein-coding Genes

5392 genes

Non-Coding Genes

77 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tonb-like proteinEDF67_101120Not AvailablePositive118839 - 11995442529.3
outer membrane receptor protein involved in fe transportEDF67_101121Not AvailablePositive120022 - 12246990868.5
short-subunit dehydrogenaseEDF67_101122Not AvailableNegative122686 - 12352530369.1
arac family transcriptional regulatorEDF67_101123Not AvailableNegative123598 - 12450635612.5
rna polymerase sigma factor (sigma-70 family)EDF67_101124Not AvailablePositive124756 - 12531022180.9
fecr family proteinEDF67_101125Not AvailablePositive125364 - 12635637697.3
tonb-dependent receptor-like proteinEDF67_101126Not AvailablePositive126358 - 129396113482.0
uncharacterized protein duf4876EDF67_101127Not AvailablePositive129401 - 13074449608.1
hypothetical proteinEDF67_101128Not AvailablePositive130777 - 13232160050.3
cytochrome c peroxidaseEDF67_101129Not AvailablePositive132387 - 13348740989.8

Displaying genes 121 – 130 of 5469 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.