Dokdonia sinensis

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Dokdonia

Description

Dokdonia sinensis is a Gram-negative bacterium characterized by its rod-shaped morphology. It has been documented with a single replicon, indicating a relatively simple genomic structure. The strain is cataloged under the accession REFV00000000.1, which provides a reference for researchers interested in exploring its genetic makeup and functional attributes. As a member of the diverse microbial community, Dokdonia sinensis may play significant roles in its ecological niche, particularly in marine environments where it is typically found. The characteristics of Gram-negative bacteria, including their unique cell wall structure, often contribute to their adaptability and interactions within various ecosystems. These traits can influence nutrient cycling and the overall dynamics of microbial populations. Studying Dokdonia sinensis can offer insights into the ecological functions of marine bacteria, including their contributions to biogeochemical processes. Understanding its role could enhance our knowledge of microbial ecology and the impact of bacteria on ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusDokdonia
SpeciesDokdonia sinensis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dokdonia sinensis strain SH27 Scaffold43, whole genome shotgun

Gene Summary

Adenine Count

1105763 bp

Thymine Count

1101934 bp

Guanine Count

714701 bp

Cytosine Count

728642 bp

Genome Length

3651050 bp

Protein-coding Genes

3191 genes

Non-Coding Genes

45 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aminotransferase class ivEAX61_01500Not AvailableNegative361605 - 36245032062.8
srpbcc domain-containing proteinEAX61_01505Not AvailableNegative362502 - 36288814946.5
Trna-metNot AvailableNot AvailablePositive363046 - 363119Not Available
hypothetical proteinEAX61_01515Not AvailableNegative363301 - 3635318365.99
oxygen-independent coproporphyrinogen iii oxidaseEAX61_01520Not AvailablePositive363577 - 36493852023.6
sulfite exporter taue/safe family proteinEAX61_01525Not AvailableNegative365318 - 36602525519.6
cytochrome c oxidase cbb3EAX61_01530Not AvailableNegative366025 - 36647117335.6
cytochrome c oxidase accessory protein ccogEAX61_01535Not AvailableNegative366583 - 36800453994.1
hypothetical proteinEAX61_01540Not AvailableNegative368004 - 36832111788.3
cytochrome c oxidase subunit iiiEAX61_01545Not AvailableNegative368325 - 36931136339.1

Displaying genes 301 – 310 of 3236 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.