Dokdonia sinensis

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Dokdonia

Description

Dokdonia sinensis is a Gram-negative bacterium characterized by its rod-shaped morphology. It has been documented with a single replicon, indicating a relatively simple genomic structure. The strain is cataloged under the accession REFV00000000.1, which provides a reference for researchers interested in exploring its genetic makeup and functional attributes. As a member of the diverse microbial community, Dokdonia sinensis may play significant roles in its ecological niche, particularly in marine environments where it is typically found. The characteristics of Gram-negative bacteria, including their unique cell wall structure, often contribute to their adaptability and interactions within various ecosystems. These traits can influence nutrient cycling and the overall dynamics of microbial populations. Studying Dokdonia sinensis can offer insights into the ecological functions of marine bacteria, including their contributions to biogeochemical processes. Understanding its role could enhance our knowledge of microbial ecology and the impact of bacteria on ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusDokdonia
SpeciesDokdonia sinensis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dokdonia sinensis strain SH27 Scaffold43, whole genome shotgun

Gene Summary

Adenine Count

1105763 bp

Thymine Count

1101934 bp

Guanine Count

714701 bp

Cytosine Count

728642 bp

Genome Length

3651050 bp

Protein-coding Genes

3191 genes

Non-Coding Genes

45 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
prolipoprotein diacylglyceryl transferaseEAX61_01350Not AvailablePositive327138 - 32766220452.8
hypothetical proteinEAX61_01355Not AvailablePositive327659 - 32799712499.2
tonb-dependent receptorEAX61_01360Not AvailablePositive328028 - 33042489384.1
type 1 periplasmic binding fold superfamily proteinEAX61_01365Not AvailablePositive330580 - 33114019425.1
nad(p)h-hydrate dehydrataseEAX61_01370Not AvailableNegative331301 - 33283656261.0
tonb-dependent receptorEAX61_01375Not AvailablePositive333057 - 33543889828.6
duf4249 family proteinEAX61_01380Not AvailablePositive335438 - 33631633259.7
duf4249 family proteinEAX61_01385Not AvailablePositive336337 - 33722733294.9
m23 family metallopeptidaseEAX61_01390Not AvailablePositive337314 - 33900864166.9
tonb-dependent receptorEAX61_01395Not AvailablePositive339014 - 34148593509.4

Displaying genes 271 – 280 of 3236 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.