Dokdonia sinensis

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Dokdonia

Description

Dokdonia sinensis is a Gram-negative bacterium characterized by its rod-shaped morphology. It has been documented with a single replicon, indicating a relatively simple genomic structure. The strain is cataloged under the accession REFV00000000.1, which provides a reference for researchers interested in exploring its genetic makeup and functional attributes. As a member of the diverse microbial community, Dokdonia sinensis may play significant roles in its ecological niche, particularly in marine environments where it is typically found. The characteristics of Gram-negative bacteria, including their unique cell wall structure, often contribute to their adaptability and interactions within various ecosystems. These traits can influence nutrient cycling and the overall dynamics of microbial populations. Studying Dokdonia sinensis can offer insights into the ecological functions of marine bacteria, including their contributions to biogeochemical processes. Understanding its role could enhance our knowledge of microbial ecology and the impact of bacteria on ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusDokdonia
SpeciesDokdonia sinensis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dokdonia sinensis strain SH27 Scaffold43, whole genome shotgun

Gene Summary

Adenine Count

1105763 bp

Thymine Count

1101934 bp

Guanine Count

714701 bp

Cytosine Count

728642 bp

Genome Length

3651050 bp

Protein-coding Genes

3191 genes

Non-Coding Genes

45 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative addiction module antidote proteinEAX61_01300Not AvailableNegative317338 - 31762210048.2
type ii toxin-antitoxin system rele/pare family toxinEAX61_01305Not AvailableNegative317624 - 31792611666.3
penicillin-binding proteinEAX61_01310Not AvailableNegative318139 - 31915538026.8
endopeptidase laEAX61_01315Not AvailableNegative319275 - 32172591866.5
4fe-4s dicluster domain-containing proteinEAX61_01320Not AvailableNegative321932 - 32228512885.8
acyl-coa reductaseEAX61_01325Not AvailablePositive322348 - 32346642473.1
3-phosphoserine/phosphohydroxythreonine transaminaseEAX61_01330Not AvailablePositive323542 - 32460639218.0
3-phosphoglycerate dehydrogenaseEAX61_01335Not AvailablePositive324786 - 32573934199.4
duf937 domain-containing proteinEAX61_01340Not AvailablePositive325866 - 32650120812.2
hypothetical proteinEAX61_01345Not AvailablePositive326712 - 32711915892.8

Displaying genes 261 – 270 of 3236 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.