Dokdonia sinensis

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Dokdonia

Description

Dokdonia sinensis is a Gram-negative bacterium characterized by its rod-shaped morphology. It has been documented with a single replicon, indicating a relatively simple genomic structure. The strain is cataloged under the accession REFV00000000.1, which provides a reference for researchers interested in exploring its genetic makeup and functional attributes. As a member of the diverse microbial community, Dokdonia sinensis may play significant roles in its ecological niche, particularly in marine environments where it is typically found. The characteristics of Gram-negative bacteria, including their unique cell wall structure, often contribute to their adaptability and interactions within various ecosystems. These traits can influence nutrient cycling and the overall dynamics of microbial populations. Studying Dokdonia sinensis can offer insights into the ecological functions of marine bacteria, including their contributions to biogeochemical processes. Understanding its role could enhance our knowledge of microbial ecology and the impact of bacteria on ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusDokdonia
SpeciesDokdonia sinensis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dokdonia sinensis strain SH27 Scaffold43, whole genome shotgun

Gene Summary

Adenine Count

1105763 bp

Thymine Count

1101934 bp

Guanine Count

714701 bp

Cytosine Count

728642 bp

Genome Length

3651050 bp

Protein-coding Genes

3191 genes

Non-Coding Genes

45 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
30s ribosomal protein s12 methylthiotransferase rimoEAX61_00805Not AvailableNegative204860 - 20621251547.9
hypothetical proteinEAX61_00810Not AvailableNegative206321 - 20666213459.8
signal recognition particle-docking protein ftsyEAX61_00815Not AvailableNegative206728 - 20768134387.5
type ii 3-dehydroquinate dehydrataseEAX61_00820Not AvailableNegative207775 - 20820916107.0
site-specific tyrosine recombinase xerdEAX61_00825Not AvailablePositive208367 - 20926934769.1
hypothetical proteinEAX61_00830Not AvailableNegative209263 - 212520124994.0
m24 family metallopeptidaseEAX61_00835Not AvailableNegative212629 - 21394249779.1
Ncrna_class:rnase_p_rnaNot AvailableNot AvailablePositive214253 - 214576Not Available
hypothetical proteinEAX61_00840Not AvailableNegative214022 - 21449517880.6
hypothetical proteinEAX61_00845Not AvailableNegative214600 - 21523223228.3

Displaying genes 161 – 170 of 3236 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.