Pigmentiphaga humi

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Alcaligenaceae

Genus

Pigmentiphaga

Description

Pigmentiphaga humi is a Gram-negative, rod-shaped bacterium characterized by its unique ecological niche. This organism is notable for possessing a single replicon, which is indicative of its genetic structure and stability. The accession number for Pigmentiphaga humi is UWPJ00000000.1, which serves as a reference for its genomic data in biological databases. The Gram-negative classification of Pigmentiphaga humi suggests that it has a distinctive cell wall structure, which typically includes an outer membrane containing lipopolysaccharides. This structural characteristic may confer specific advantages in its natural environment, such as resistance to certain antibiotics or the ability to thrive in various ecological settings. The ecological role of Pigmentiphaga humi may be significant, particularly in soil ecosystems where it might contribute to nutrient cycling and organic matter decomposition. Its rod shape may also play a role in its motility and ability to colonize different substrates within its habitat. In summary, Pigmentiphaga humi exemplifies the diversity of Gram-negative bacteria, with its single replicon structure and rod morphology potentially influencing its ecological interactions. Understanding such traits can provide insights into the ecological functions of microbial communities in soil environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyAlcaligenaceae
GenusPigmentiphaga
SpeciesPigmentiphaga humi
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pigmentiphaga sp. IMT-318 isolate dnA1 genome assembly, contig:

Gene Summary

Adenine Count

848102 bp

Thymine Count

848000 bp

Guanine Count

1704798 bp

Cytosine Count

1718013 bp

Genome Length

5118913 bp

Protein-coding Genes

4636 genes

Non-Coding Genes

101 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
high-affinity branched-chain amino acid transport atp-binding protein livfPIGHUM_00242Not AvailableNegative259072 - 25977925419.3
lipopolysaccharide export system atp-binding protein lptbPIGHUM_00243Not AvailableNegative259772 - 26053627432.5
leucine/isoleucine/valine transporter permease subunitPIGHUM_00244Not AvailableNegative260533 - 26154935932.0
high-affinity branched-chain amino acid transport system permease protein livhPIGHUM_00245Not AvailableNegative261549 - 26237329141.0
aliphatic amidase expression-regulating proteinPIGHUM_00246Not AvailableNegative262533 - 26370841625.9
hth-type transcriptional repressor csirPIGHUM_00247Not AvailableNegative263808 - 26459328790.7
ammonia channel precursorPIGHUM_00248Not AvailableNegative264779 - 26610745874.7
nitrogen regulatory protein p-iiPIGHUM_00249Not AvailableNegative266121 - 26645912399.2
bacterial protein of unknown function (gcw_chp)PIGHUM_00250Not AvailableNegative266517 - 26723926174.4
membrane fusogenic activityPIGHUM_00251Not AvailablePositive267503 - 26776910076.1

Displaying genes 311 – 320 of 4737 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.