Pigmentiphaga humi

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Alcaligenaceae

Genus

Pigmentiphaga

Description

Pigmentiphaga humi is a Gram-negative, rod-shaped bacterium characterized by its unique ecological niche. This organism is notable for possessing a single replicon, which is indicative of its genetic structure and stability. The accession number for Pigmentiphaga humi is UWPJ00000000.1, which serves as a reference for its genomic data in biological databases. The Gram-negative classification of Pigmentiphaga humi suggests that it has a distinctive cell wall structure, which typically includes an outer membrane containing lipopolysaccharides. This structural characteristic may confer specific advantages in its natural environment, such as resistance to certain antibiotics or the ability to thrive in various ecological settings. The ecological role of Pigmentiphaga humi may be significant, particularly in soil ecosystems where it might contribute to nutrient cycling and organic matter decomposition. Its rod shape may also play a role in its motility and ability to colonize different substrates within its habitat. In summary, Pigmentiphaga humi exemplifies the diversity of Gram-negative bacteria, with its single replicon structure and rod morphology potentially influencing its ecological interactions. Understanding such traits can provide insights into the ecological functions of microbial communities in soil environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyAlcaligenaceae
GenusPigmentiphaga
SpeciesPigmentiphaga humi
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pigmentiphaga sp. IMT-318 isolate dnA1 genome assembly, contig:

Gene Summary

Adenine Count

848102 bp

Thymine Count

848000 bp

Guanine Count

1704798 bp

Cytosine Count

1718013 bp

Genome Length

5118913 bp

Protein-coding Genes

4636 genes

Non-Coding Genes

101 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gdp-mannose-dependent alpha-mannosyltransferasePIGHUM_00099Not AvailablePositive101065 - 10211139042.2
adenosylhomocysteinasePIGHUM_00100Not AvailablePositive102406 - 10382451582.8
membrane protein of unknown functionPIGHUM_00101Not AvailablePositive103888 - 10422611815.3
5,10-methylenetetrahydrofolate reductasePIGHUM_00102Not AvailablePositive104252 - 10513031795.9
putative 5-formyltetrahydrofolate cyclo-ligasePIGHUM_00103Not AvailableNegative105216 - 10588423576.3
soluble lytic murein transglycosylase precursorPIGHUM_00104Not AvailablePositive105952 - 10785071200.7
dtdp-4-dehydrorhamnose reductasePIGHUM_00105Not AvailablePositive107867 - 10883235325.7
multifunctional cca proteinPIGHUM_00106Not AvailablePositive108910 - 11004041048.0
inner membrane abc transporter atp-binding protein yddaPIGHUM_00107Not AvailablePositive110110 - 11194867061.1
glyoxylate/hydroxypyruvate reductase aPIGHUM_00108Not AvailableNegative111950 - 11288834309.3

Displaying genes 171 – 180 of 4737 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.