Parabacteroides sp. CH2-D42-20

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Tannerellaceae

Genus

Parabacteroides

Description

Parabacteroides sp. CH2-D42-20 is a rod-shaped bacterium characterized by the presence of flagella, which may facilitate motility in its environment. This species is identified by a single replicon, indicating a streamlined genomic structure that can have implications for its replication and cellular function. The genomic data for this organism can be referenced under the accession number RAYG00000000.1. In the context of microbial ecology, the presence of flagella in Parabacteroides sp. CH2-D42-20 suggests that it may play a role in navigating its environment, potentially influencing its interactions with other microorganisms or the host. The rod shape and motility could contribute to its ability to colonize specific niches within a microbiome, allowing it to effectively exploit available resources. Understanding the traits of this bacterium, particularly its mobility and genetic organization, may provide insights into its ecological roles and potential applications in biotechnology or health-related fields.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyTannerellaceae
GenusParabacteroides
SpeciesParabacteroides sp. CH2-D42-20
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Parabacteroides sp. CH2-D42-20 Scaffold95_1, whole genome shotgun

Gene Summary

Adenine Count

1421810 bp

Thymine Count

1409985 bp

Guanine Count

1147460 bp

Cytosine Count

1171003 bp

Genome Length

5158047 bp

Protein-coding Genes

4161 genes

Non-Coding Genes

92 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ragb/susd family nutrient uptake outer membrane proteinD7V92_16030Not AvailableNegative3836289 - 383792062414.0
tonb-dependent receptorD7V92_16035Not AvailableNegative3837962 - 3841141116669.0
glucuronate isomeraseD7V92_16040Not AvailableNegative3841396 - 384279954456.9
bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolaseD7V92_16045Not AvailableNegative3842796 - 384347024292.6
sugar kinaseD7V92_16050Not AvailableNegative3843507 - 384455038108.4
aaa family atpaseD7V92_16055Not AvailableNegative3844633 - 384620160679.0
trna dihydrouridine synthase dusbD7V92_16060Not AvailableNegative3846501 - 384749036996.2
u32 family peptidaseD7V92_16070Not AvailablePositive3847794 - 384902946201.8
acyl-coa thioesteraseD7V92_16075Not AvailablePositive3849029 - 384944215889.8
dna-protecting protein dpraD7V92_16080Not AvailablePositive3849443 - 385056141137.8

Displaying genes 3111 – 3120 of 4253 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.