Sphingomonas ginkgonis

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas ginkgonis is a rod-shaped bacterium characterized by the presence of flagella, which facilitates motility. This organism has a single replicon, indicating a streamlined genetic structure that is typical of certain bacterial species. The accession number for Sphingomonas ginkgonis is RWJF00000000.1, which provides a reference for genetic and genomic studies associated with this bacterium. As a member of the genus Sphingomonas, Sphingomonas ginkgonis may play a role in various ecological niches, particularly in environments rich in organic matter where its metabolic capabilities can be utilized. Members of this genus are known for their ability to degrade complex organic compounds, which suggests that Sphingomonas ginkgonis could contribute to bioremediation processes. The presence of flagella not only aids in its mobility but may also enable the bacterium to navigate toward nutrient sources in its environment. Overall, the traits of Sphingomonas ginkgonis highlight its potential ecological significance, particularly in the degradation of organic pollutants, which aligns with the functional roles of many Sphingomonas species in microbial communities. Understanding the characteristics of Sphingomonas ginkgonis may provide insights into its applications in environmental microbiology and biotechnological processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas ginkgonis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas ginkgonis
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas ginkgonis strain HMF7854 contig00002, whole genome

Gene Summary

Adenine Count

509618 bp

Thymine Count

505008 bp

Guanine Count

1100928 bp

Cytosine Count

1098047 bp

Genome Length

3213677 bp

Protein-coding Genes

2995 genes

Non-Coding Genes

73 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
amidaseHMF7854_01265Not AvailablePositive254830 - 25635051939.4
multidrug efflux smr transporterHMF7854_01270Not AvailableNegative256347 - 25666110929.8
duf1345 domain-containing proteinHMF7854_01275Not AvailablePositive256712 - 25736223653.0
dmt family transporterHMF7854_01280Not AvailableNegative257359 - 25825231179.4
tigr02281 family clan aa aspartic proteaseHMF7854_01285Not AvailableNegative258285 - 25881517803.5
flavodoxin-dependent (e)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthaseHMF7854_01290Not AvailableNegative258979 - 26010640116.1
tir domain-containing proteinHMF7854_01295Not AvailablePositive260233 - 26239278843.6
hypothetical proteinHMF7854_01300Not AvailablePositive262389 - 26284116525.6
hypothetical proteinHMF7854_01305Not AvailablePositive262883 - 26339518414.0
hypothetical proteinHMF7854_01310Not AvailablePositive263436 - 26435033188.7

Displaying genes 301 – 310 of 3068 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.