Sphingomonas ginkgonis

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas ginkgonis is a rod-shaped bacterium characterized by the presence of flagella, which facilitates motility. This organism has a single replicon, indicating a streamlined genetic structure that is typical of certain bacterial species. The accession number for Sphingomonas ginkgonis is RWJF00000000.1, which provides a reference for genetic and genomic studies associated with this bacterium. As a member of the genus Sphingomonas, Sphingomonas ginkgonis may play a role in various ecological niches, particularly in environments rich in organic matter where its metabolic capabilities can be utilized. Members of this genus are known for their ability to degrade complex organic compounds, which suggests that Sphingomonas ginkgonis could contribute to bioremediation processes. The presence of flagella not only aids in its mobility but may also enable the bacterium to navigate toward nutrient sources in its environment. Overall, the traits of Sphingomonas ginkgonis highlight its potential ecological significance, particularly in the degradation of organic pollutants, which aligns with the functional roles of many Sphingomonas species in microbial communities. Understanding the characteristics of Sphingomonas ginkgonis may provide insights into its applications in environmental microbiology and biotechnological processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas ginkgonis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas ginkgonis
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas ginkgonis strain HMF7854 contig00002, whole genome

Gene Summary

Adenine Count

509618 bp

Thymine Count

505008 bp

Guanine Count

1100928 bp

Cytosine Count

1098047 bp

Genome Length

3213677 bp

Protein-coding Genes

2995 genes

Non-Coding Genes

73 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
voc family proteinHMF7854_15015Not AvailableNegative3107231 - 310761413763.1
s-(hydroxymethyl)glutathione dehydrogenase/class iii alcohol dehydrogenaseHMF7854_15020Not AvailableNegative3107628 - 310874039517.6
osmc family peroxiredoxinHMF7854_15025Not AvailableNegative3108809 - 310926716574.2
giy-yig nuclease family proteinHMF7854_15030Not AvailablePositive3109376 - 310967511635.1
acyl-coa carboxylase subunit betaHMF7854_15035Not AvailableNegative3109813 - 311133955579.6
udp-galactopyranose mutaseHMF7854_15040Not AvailablePositive3111729 - 311397584425.1
histidine phosphatase family proteinHMF7854_15045Not AvailablePositive3114128 - 311490128714.2
nad(p)h-hydrate dehydrataseHMF7854_15050Not AvailablePositive3114916 - 311577928786.7
pyruvate kinaseHMF7854_15055Not AvailableNegative3115776 - 311723352379.1
duf2312 domain-containing proteinHMF7854_15060Not AvailablePositive3117358 - 31176009176.97

Displaying genes 2961 – 2970 of 3068 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.