Sphingomonas ginkgonis

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas ginkgonis is a rod-shaped bacterium characterized by the presence of flagella, which facilitates motility. This organism has a single replicon, indicating a streamlined genetic structure that is typical of certain bacterial species. The accession number for Sphingomonas ginkgonis is RWJF00000000.1, which provides a reference for genetic and genomic studies associated with this bacterium. As a member of the genus Sphingomonas, Sphingomonas ginkgonis may play a role in various ecological niches, particularly in environments rich in organic matter where its metabolic capabilities can be utilized. Members of this genus are known for their ability to degrade complex organic compounds, which suggests that Sphingomonas ginkgonis could contribute to bioremediation processes. The presence of flagella not only aids in its mobility but may also enable the bacterium to navigate toward nutrient sources in its environment. Overall, the traits of Sphingomonas ginkgonis highlight its potential ecological significance, particularly in the degradation of organic pollutants, which aligns with the functional roles of many Sphingomonas species in microbial communities. Understanding the characteristics of Sphingomonas ginkgonis may provide insights into its applications in environmental microbiology and biotechnological processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas ginkgonis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas ginkgonis
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas ginkgonis strain HMF7854 contig00002, whole genome

Gene Summary

Adenine Count

509618 bp

Thymine Count

505008 bp

Guanine Count

1100928 bp

Cytosine Count

1098047 bp

Genome Length

3213677 bp

Protein-coding Genes

2995 genes

Non-Coding Genes

73 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
50s ribosomal protein l27HMF7854_11290Not AvailablePositive2327403 - 23276759827.71
n-acetyltransferaseHMF7854_11295Not AvailablePositive2327846 - 232839119523.6
metal-dependent hydrolaseHMF7854_11300Not AvailableNegative2328510 - 232939433955.5
tetr/acrr family transcriptional regulatorHMF7854_11305Not AvailablePositive2329443 - 233002120228.5
gtpase obgeHMF7854_11310Not AvailablePositive2330070 - 233111036779.4
nad-dependent epimerase/dehydratase family proteinHMF7854_11315Not AvailablePositive2331107 - 233201231300.6
duf423 domain-containing proteinHMF7854_11320Not AvailablePositive2332012 - 233239212915.4
peptide-methionine (r)-s-oxide reductaseHMF7854_11325Not AvailablePositive2332504 - 233300417964.7
peptide-methionine (s)-s-oxide reductaseHMF7854_11330Not AvailablePositive2333001 - 233361222192.9
phosphoribosylformylglycinamidine synthase subunit pursHMF7854_11335Not AvailablePositive2333902 - 23341328151.96

Displaying genes 2221 – 2230 of 3068 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.