Sphingomonas ginkgonis

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas ginkgonis is a rod-shaped bacterium characterized by the presence of flagella, which facilitates motility. This organism has a single replicon, indicating a streamlined genetic structure that is typical of certain bacterial species. The accession number for Sphingomonas ginkgonis is RWJF00000000.1, which provides a reference for genetic and genomic studies associated with this bacterium. As a member of the genus Sphingomonas, Sphingomonas ginkgonis may play a role in various ecological niches, particularly in environments rich in organic matter where its metabolic capabilities can be utilized. Members of this genus are known for their ability to degrade complex organic compounds, which suggests that Sphingomonas ginkgonis could contribute to bioremediation processes. The presence of flagella not only aids in its mobility but may also enable the bacterium to navigate toward nutrient sources in its environment. Overall, the traits of Sphingomonas ginkgonis highlight its potential ecological significance, particularly in the degradation of organic pollutants, which aligns with the functional roles of many Sphingomonas species in microbial communities. Understanding the characteristics of Sphingomonas ginkgonis may provide insights into its applications in environmental microbiology and biotechnological processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas ginkgonis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas ginkgonis
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas ginkgonis strain HMF7854 contig00002, whole genome

Gene Summary

Adenine Count

509618 bp

Thymine Count

505008 bp

Guanine Count

1100928 bp

Cytosine Count

1098047 bp

Genome Length

3213677 bp

Protein-coding Genes

2995 genes

Non-Coding Genes

73 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pa0069 family radical sam proteinHMF7854_09445Not AvailableNegative1925696 - 192676639359.3
lytic transglycosylase domain-containing proteinHMF7854_09450Not AvailableNegative1926810 - 192864565432.3
uracil-dna glycosylaseHMF7854_09455Not AvailableNegative1928642 - 192938226090.6
electron transfer flavoprotein-ubiquinone oxidoreductaseHMF7854_09460Not AvailablePositive1929465 - 193111759923.4
tetratricopeptide repeat proteinHMF7854_09465Not AvailablePositive1931134 - 193277457028.9
4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinaseHMF7854_09470Not AvailablePositive1932771 - 193358328119.6
nad(p)h-hydrate dehydrataseHMF7854_09475Not AvailablePositive1933594 - 193493745563.2
class i sam-dependent rna methyltransferaseHMF7854_09480Not AvailablePositive1934934 - 193612141710.9
glycosyltransferaseHMF7854_09485Not AvailablePositive1936180 - 1939629125552.0
mapeg family proteinHMF7854_09490Not AvailableNegative1939573 - 194001316094.0

Displaying genes 1861 – 1870 of 3068 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.