Sphingomonas ginkgonis

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas ginkgonis is a rod-shaped bacterium characterized by the presence of flagella, which facilitates motility. This organism has a single replicon, indicating a streamlined genetic structure that is typical of certain bacterial species. The accession number for Sphingomonas ginkgonis is RWJF00000000.1, which provides a reference for genetic and genomic studies associated with this bacterium. As a member of the genus Sphingomonas, Sphingomonas ginkgonis may play a role in various ecological niches, particularly in environments rich in organic matter where its metabolic capabilities can be utilized. Members of this genus are known for their ability to degrade complex organic compounds, which suggests that Sphingomonas ginkgonis could contribute to bioremediation processes. The presence of flagella not only aids in its mobility but may also enable the bacterium to navigate toward nutrient sources in its environment. Overall, the traits of Sphingomonas ginkgonis highlight its potential ecological significance, particularly in the degradation of organic pollutants, which aligns with the functional roles of many Sphingomonas species in microbial communities. Understanding the characteristics of Sphingomonas ginkgonis may provide insights into its applications in environmental microbiology and biotechnological processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas ginkgonis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas ginkgonis
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas ginkgonis strain HMF7854 contig00002, whole genome

Gene Summary

Adenine Count

509618 bp

Thymine Count

505008 bp

Guanine Count

1100928 bp

Cytosine Count

1098047 bp

Genome Length

3213677 bp

Protein-coding Genes

2995 genes

Non-Coding Genes

73 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type ii secretion system f family proteinHMF7854_06395Not AvailableNegative1322053 - 132302735362.1
pilus assembly protein cpaeHMF7854_06400Not AvailableNegative1323074 - 132434845251.3
flp pilus assembly protein cpabHMF7854_06410Not AvailableNegative1326501 - 132755936002.6
peptidaseHMF7854_06415Not AvailableNegative1327605 - 132807516524.9
fad-binding oxidoreductaseHMF7854_06420Not AvailablePositive1328123 - 132924139408.9
ribonuclease hiHMF7854_06425Not AvailableNegative1329238 - 132968116337.3
4-hydroxy-3-methylbut-2-enyl diphosphate reductaseHMF7854_06430Not AvailableNegative1329683 - 133063934842.9
hypothetical proteinHMF7854_06435Not AvailablePositive1330742 - 133135021012.9
glycine cleavage system aminomethyltransferase gcvtHMF7854_06440Not AvailablePositive1331690 - 133279939319.3
glycine cleavage system protein gcvhHMF7854_06445Not AvailablePositive1332801 - 133317213342.5

Displaying genes 1261 – 1270 of 3068 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.