Gemmobacter lutimaris str. YJ-T1-11

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Gemmobacter

Description

Gemmobacter lutimaris str. YJ-T1-11 is a Gram-negative, rod-shaped bacterium. It possesses a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability and survival in various environments. The strain is cataloged with the accession number QXXQ00000000.1, which provides a reference for researchers interested in studying its genetic makeup and potential applications. The classification of Gemmobacter lutimaris within the broader context of microbial diversity suggests that it may have specific ecological roles, particularly in its natural habitat. Being a Gram-negative organism, it is likely to have a complex cell wall structure that can influence its interactions with other microorganisms and its environment. Such structural features can impact its ability to withstand environmental stresses, nutrient availability, and competition with other microbial species. Understanding the characteristics of Gemmobacter lutimaris str. YJ-T1-11 contributes to our knowledge of microbial ecology, particularly in environments where such bacteria thrive. The specific traits of this strain may enable it to occupy a niche that supports its growth and reproduction, highlighting the importance of studying individual bacterial species to comprehend the intricate relationships within microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusGemmobacter
SpeciesGemmobacter lutimaris
StrainYJ-T1-11

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Gemmobacter lutimaris strain YJ-T1-11 scaffold_80, whole genome

Gene Summary

Adenine Count

824174 bp

Thymine Count

833542 bp

Guanine Count

1512721 bp

Cytosine Count

1490940 bp

Genome Length

4661677 bp

Protein-coding Genes

4299 genes

Non-Coding Genes

169 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nad-dependent succinate-semialdehyde dehydrogenaseD2N39_03775Not AvailableNegative782219 - 78366750593.0
3,4-dihydroxyphenylacetate 2,3-dioxygenaseD2N39_03780Not AvailableNegative783675 - 78465536863.7
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenaseD2N39_03785Not AvailableNegative784684 - 78619554494.4
5-carboxymethyl-2-hydroxymuconate isomeraseD2N39_03790Not AvailableNegative786205 - 78659413602.5
homoprotocatechuate degradation operon regulator hparD2N39_03795Not AvailablePositive786694 - 78715517229.8
yeee/yede family proteinD2N39_03800Not AvailableNegative787395 - 78852538108.2
sulfurtransferaseD2N39_03805Not AvailableNegative788525 - 78945732035.8
dihydroxyacetone kinase subunit dhakD2N39_03810Not AvailableNegative789784 - 79154459941.8
abc transporter permeaseD2N39_03815Not AvailableNegative791566 - 79255833745.1
sugar abc transporter atp-binding proteinD2N39_03820Not AvailableNegative792548 - 79407755358.5

Displaying genes 911 – 920 of 4468 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.