Gemmobacter lutimaris str. YJ-T1-11

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Gemmobacter

Description

Gemmobacter lutimaris str. YJ-T1-11 is a Gram-negative, rod-shaped bacterium. It possesses a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability and survival in various environments. The strain is cataloged with the accession number QXXQ00000000.1, which provides a reference for researchers interested in studying its genetic makeup and potential applications. The classification of Gemmobacter lutimaris within the broader context of microbial diversity suggests that it may have specific ecological roles, particularly in its natural habitat. Being a Gram-negative organism, it is likely to have a complex cell wall structure that can influence its interactions with other microorganisms and its environment. Such structural features can impact its ability to withstand environmental stresses, nutrient availability, and competition with other microbial species. Understanding the characteristics of Gemmobacter lutimaris str. YJ-T1-11 contributes to our knowledge of microbial ecology, particularly in environments where such bacteria thrive. The specific traits of this strain may enable it to occupy a niche that supports its growth and reproduction, highlighting the importance of studying individual bacterial species to comprehend the intricate relationships within microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusGemmobacter
SpeciesGemmobacter lutimaris
StrainYJ-T1-11

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Gemmobacter lutimaris strain YJ-T1-11 scaffold_80, whole genome

Gene Summary

Adenine Count

824174 bp

Thymine Count

833542 bp

Guanine Count

1512721 bp

Cytosine Count

1490940 bp

Genome Length

4661677 bp

Protein-coding Genes

4299 genes

Non-Coding Genes

169 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lps-assembly protein lptdD2N39_00520Not AvailablePositive112613 - 11477579568.8
peptidylprolyl isomeraseD2N39_00525Not AvailablePositive114763 - 11604046303.0
4-hydroxythreonine-4-phosphate dehydrogenase pdxaD2N39_00530Not AvailablePositive116044 - 11702133621.0
16s rrna (adenine(1518)-n(6)/adenine(1519)-n(6))- dimethyltransferase rsmaD2N39_00535Not AvailablePositive117085 - 11792430375.3
duf4167 domain-containing proteinD2N39_00540Not AvailableNegative117950 - 11872628337.5
peptide chain release factor n(5)-glutamine methyltransferaseD2N39_00545Not AvailableNegative118960 - 11979328902.6
peptide chain release factor 1D2N39_00550Not AvailableNegative119790 - 12084538536.0
duf1499 domain-containing proteinD2N39_00555Not AvailableNegative120877 - 12135016821.5
agmatinaseD2N39_00560Not AvailableNegative121347 - 12231234978.4
dna starvation/stationary phase protection proteinD2N39_00565Not AvailableNegative122427 - 12292117974.5

Displaying genes 261 – 270 of 4468 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.