Gemmobacter lutimaris str. YJ-T1-11

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Gemmobacter

Description

Gemmobacter lutimaris str. YJ-T1-11 is a Gram-negative, rod-shaped bacterium. It possesses a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability and survival in various environments. The strain is cataloged with the accession number QXXQ00000000.1, which provides a reference for researchers interested in studying its genetic makeup and potential applications. The classification of Gemmobacter lutimaris within the broader context of microbial diversity suggests that it may have specific ecological roles, particularly in its natural habitat. Being a Gram-negative organism, it is likely to have a complex cell wall structure that can influence its interactions with other microorganisms and its environment. Such structural features can impact its ability to withstand environmental stresses, nutrient availability, and competition with other microbial species. Understanding the characteristics of Gemmobacter lutimaris str. YJ-T1-11 contributes to our knowledge of microbial ecology, particularly in environments where such bacteria thrive. The specific traits of this strain may enable it to occupy a niche that supports its growth and reproduction, highlighting the importance of studying individual bacterial species to comprehend the intricate relationships within microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusGemmobacter
SpeciesGemmobacter lutimaris
StrainYJ-T1-11

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Gemmobacter lutimaris strain YJ-T1-11 scaffold_80, whole genome

Gene Summary

Adenine Count

824174 bp

Thymine Count

833542 bp

Guanine Count

1512721 bp

Cytosine Count

1490940 bp

Genome Length

4661677 bp

Protein-coding Genes

4299 genes

Non-Coding Genes

169 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
amidohydrolaseD2N39_08450Not AvailablePositive1701822 - 170349259169.9
calcium-binding proteinD2N39_08465Not AvailablePositive1704685 - 170668569145.8
tetr/acrr family transcriptional regulatorD2N39_08470Not AvailableNegative1706809 - 170740822215.6
phenylacetate--coa ligaseD2N39_08475Not AvailableNegative1707512 - 170882249115.0
hydroxyphenylacetyl-coa thioesterase paaiD2N39_08480Not AvailableNegative1708852 - 170930116123.1
2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-coa isomeraseD2N39_08485Not AvailableNegative1709298 - 171009227898.4
phenylacetic acid degradation protein paanD2N39_08490Not AvailablePositive1710194 - 171184657310.3
abc transporter substrate-binding proteinD2N39_08495Not AvailablePositive1711880 - 171301939628.5
branched-chain amino acid abc transporter permeaseD2N39_08500Not AvailablePositive1713113 - 171398529843.3
branched-chain amino acid abc transporter permeaseD2N39_08505Not AvailablePositive1713990 - 171494633470.1

Displaying genes 1841 – 1850 of 4468 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.