Gemmobacter lutimaris str. YJ-T1-11

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Gemmobacter

Description

Gemmobacter lutimaris str. YJ-T1-11 is a Gram-negative, rod-shaped bacterium. It possesses a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability and survival in various environments. The strain is cataloged with the accession number QXXQ00000000.1, which provides a reference for researchers interested in studying its genetic makeup and potential applications. The classification of Gemmobacter lutimaris within the broader context of microbial diversity suggests that it may have specific ecological roles, particularly in its natural habitat. Being a Gram-negative organism, it is likely to have a complex cell wall structure that can influence its interactions with other microorganisms and its environment. Such structural features can impact its ability to withstand environmental stresses, nutrient availability, and competition with other microbial species. Understanding the characteristics of Gemmobacter lutimaris str. YJ-T1-11 contributes to our knowledge of microbial ecology, particularly in environments where such bacteria thrive. The specific traits of this strain may enable it to occupy a niche that supports its growth and reproduction, highlighting the importance of studying individual bacterial species to comprehend the intricate relationships within microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusGemmobacter
SpeciesGemmobacter lutimaris
StrainYJ-T1-11

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Gemmobacter lutimaris strain YJ-T1-11 scaffold_80, whole genome

Gene Summary

Adenine Count

824174 bp

Thymine Count

833542 bp

Guanine Count

1512721 bp

Cytosine Count

1490940 bp

Genome Length

4661677 bp

Protein-coding Genes

4299 genes

Non-Coding Genes

169 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphonate metabolism transcriptional regulator phnfD2N39_07285Not AvailablePositive1472003 - 147271324989.9
23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmhD2N39_07290Not AvailableNegative1472716 - 147318617215.7
ribosome silencing factorD2N39_07295Not AvailableNegative1473186 - 147351512373.8
mechanosensitive ion channel family proteinD2N39_07300Not AvailableNegative1473717 - 147507849528.1
hypothetical proteinD2N39_07305Not AvailablePositive1475126 - 14753267558.24
3-isopropylmalate dehydratase large subunitD2N39_07310Not AvailablePositive1475401 - 147681950706.7
duf3800 domain-containing proteinD2N39_07315Not AvailablePositive1476819 - 147756528018.7
3-isopropylmalate dehydratase small subunitD2N39_07320Not AvailablePositive1477690 - 147829522229.8
endonuclease/exonuclease/phosphatase family proteinD2N39_07330Not AvailablePositive1479274 - 148043441118.9
3-isopropylmalate dehydrogenaseD2N39_07335Not AvailablePositive1480537 - 148164339520.5

Displaying genes 1611 – 1620 of 4468 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.