Sphingobium terrigena

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium terrigena is a bacterial species characterized by the presence of flagella, which indicates its motility. This trait is significant as it allows the organism to navigate its environment, potentially aiding in its survival and colonization of various niches. The species has a single replicon, suggesting a streamlined genetic structure that may facilitate efficient replication and adaptability. The genome of Sphingobium terrigena is represented in the accession QVRA00000000.1, providing a resource for further genetic and functional studies. This genomic information can be crucial for understanding the metabolic capabilities and ecological roles of Sphingobium terrigena, particularly in relation to its interactions with other microorganisms and its environment. From an ecological perspective, the motility conferred by flagella may play a role in nutrient acquisition and biofilm formation, which are essential for bacterial survival in diverse environments. The ability of Sphingobium terrigena to move towards favorable conditions or away from harmful ones enhances its adaptability, making it a potentially important player in its ecosystem. Overall, the traits of Sphingobium terrigena underline its relevance in microbial ecology, particularly in relation to its movement and genetic characteristics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium terrigena
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium terrigena strain EO9 E09_98, whole genome shotgun

Gene Summary

Adenine Count

941241 bp

Thymine Count

935999 bp

Guanine Count

1573304 bp

Cytosine Count

1592460 bp

Genome Length

5043023 bp

Protein-coding Genes

4669 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tetr/acrr family transcriptional regulatorD0Z70_16955Not AvailablePositive3572385 - 357305324853.0
sdr family nad(p)-dependent oxidoreductaseD0Z70_16960Not AvailablePositive3573133 - 357399930271.2
taud/tfda family dioxygenaseD0Z70_16965Not AvailablePositive3574083 - 357491330956.8
nuclear transport factor 2 family proteinD0Z70_16970Not AvailablePositive3574957 - 357551720510.2
carboxymuconolactone decarboxylase family proteinD0Z70_16975Not AvailablePositive3575456 - 357601320609.6
tolc family proteinD0Z70_16980Not AvailablePositive3576168 - 357761050005.6
efflux rnd transporter permease subunitD0Z70_16990Not AvailableNegative3578327 - 3581605117382.0
efflux rnd transporter periplasmic adaptor subunitD0Z70_16995Not AvailableNegative3581602 - 358270238084.2
tetr/acrr family transcriptional regulatorD0Z70_17000Not AvailableNegative3582704 - 358327921101.4
efflux transporter outer membrane subunitD0Z70_17005Not AvailablePositive3583385 - 358479149297.1

Displaying genes 3331 – 3340 of 4737 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.