Sphingobium terrigena

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium terrigena is a bacterial species characterized by the presence of flagella, which indicates its motility. This trait is significant as it allows the organism to navigate its environment, potentially aiding in its survival and colonization of various niches. The species has a single replicon, suggesting a streamlined genetic structure that may facilitate efficient replication and adaptability. The genome of Sphingobium terrigena is represented in the accession QVRA00000000.1, providing a resource for further genetic and functional studies. This genomic information can be crucial for understanding the metabolic capabilities and ecological roles of Sphingobium terrigena, particularly in relation to its interactions with other microorganisms and its environment. From an ecological perspective, the motility conferred by flagella may play a role in nutrient acquisition and biofilm formation, which are essential for bacterial survival in diverse environments. The ability of Sphingobium terrigena to move towards favorable conditions or away from harmful ones enhances its adaptability, making it a potentially important player in its ecosystem. Overall, the traits of Sphingobium terrigena underline its relevance in microbial ecology, particularly in relation to its movement and genetic characteristics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium terrigena
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium terrigena strain EO9 E09_98, whole genome shotgun

Gene Summary

Adenine Count

941241 bp

Thymine Count

935999 bp

Guanine Count

1573304 bp

Cytosine Count

1592460 bp

Genome Length

5043023 bp

Protein-coding Genes

4669 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
4-hydroxyphenylpyruvate dioxygenaseD0Z70_11390Not AvailableNegative2400151 - 240119138812.7
phenylalanine 4-monooxygenaseD0Z70_11395Not AvailableNegative2401188 - 240206033011.8
lrp/asnc family transcriptional regulatorD0Z70_11400Not AvailablePositive2402155 - 240263117659.1
lps export abc transporter atp-binding proteinD0Z70_11405Not AvailablePositive2402765 - 240355328378.3
rna polymerase sigma-54 factorD0Z70_11410Not AvailablePositive2403599 - 240512554502.0
d-amino-acid transaminaseD0Z70_11415Not AvailablePositive2405436 - 240628729922.1
is5 family transposaseD0Z70_11420Not AvailableNegative2406507 - 24066113935.95
cusa/czca family heavy metal efflux rnd transporterD0Z70_11425Not AvailableNegative2406796 - 2409969113855.0
hlyd family efflux transporter periplasmic adaptor subunitD0Z70_11430Not AvailableNegative2409959 - 241120344919.2
tolc family proteinD0Z70_11435Not AvailableNegative2411203 - 241247145813.6

Displaying genes 2241 – 2250 of 4737 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.