Sphingobium terrigena

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium terrigena is a bacterial species characterized by the presence of flagella, which indicates its motility. This trait is significant as it allows the organism to navigate its environment, potentially aiding in its survival and colonization of various niches. The species has a single replicon, suggesting a streamlined genetic structure that may facilitate efficient replication and adaptability. The genome of Sphingobium terrigena is represented in the accession QVRA00000000.1, providing a resource for further genetic and functional studies. This genomic information can be crucial for understanding the metabolic capabilities and ecological roles of Sphingobium terrigena, particularly in relation to its interactions with other microorganisms and its environment. From an ecological perspective, the motility conferred by flagella may play a role in nutrient acquisition and biofilm formation, which are essential for bacterial survival in diverse environments. The ability of Sphingobium terrigena to move towards favorable conditions or away from harmful ones enhances its adaptability, making it a potentially important player in its ecosystem. Overall, the traits of Sphingobium terrigena underline its relevance in microbial ecology, particularly in relation to its movement and genetic characteristics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium terrigena
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium terrigena strain EO9 E09_98, whole genome shotgun

Gene Summary

Adenine Count

941241 bp

Thymine Count

935999 bp

Guanine Count

1573304 bp

Cytosine Count

1592460 bp

Genome Length

5043023 bp

Protein-coding Genes

4669 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
argininosuccinate lyaseD0Z70_11090Not AvailableNegative2331764 - 233313449142.7
tlpa family protein disulfide reductaseD0Z70_11095Not AvailablePositive2333178 - 233375920451.2
tonb-dependent receptorD0Z70_11100Not AvailablePositive2333950 - 233658993406.5
rida family proteinD0Z70_11105Not AvailablePositive2336670 - 233709214862.1
trm112 family proteinD0Z70_11110Not AvailableNegative2337109 - 23373006595.1
atp-dependent proteaseD0Z70_11115Not AvailableNegative2337297 - 233791122653.6
co-chaperone ybbnD0Z70_11120Not AvailableNegative2337923 - 233881932092.1
mipa/ompv family proteinD0Z70_11125Not AvailableNegative2338931 - 233977029574.3
duf2141 domain-containing proteinD0Z70_11130Not AvailableNegative2339843 - 234028015400.7
fatty acid hydroxylase family proteinD0Z70_11135Not AvailableNegative2340277 - 234100827493.8

Displaying genes 2181 – 2190 of 4737 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.