Emticicia sp. C21

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Leadbetterellaceae

Genus

Emticicia

Description

Emticicia sp. C21 is a Gram-negative bacterium characterized by its rod shape. This taxon features a single replicon, which is indicative of its genomic structure. The genome of Emticicia sp. C21 is represented in the public database under the accession number QVMT00000000.1. The Gram-negative nature of Emticicia sp. C21 suggests that it possesses an outer membrane containing lipopolysaccharides, which can play a role in its interaction with the environment and other organisms. The rod shape may provide advantages in motility and colonization, making it well-suited for certain ecological niches. Overall, the specific traits of Emticicia sp. C21, particularly its Gram-negative classification and rod morphology, may influence its ecological role and interactions within microbial communities. Understanding these characteristics helps in appreciating the diversity and functionality of bacteria in various environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyLeadbetterellaceae
GenusEmticicia
SpeciesEmticicia sp. C21
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Emticicia sp. C21 contig33, whole genome shotgun sequence.

Gene Summary

Adenine Count

2054638 bp

Thymine Count

2056303 bp

Guanine Count

1265584 bp

Cytosine Count

1265400 bp

Genome Length

6641932 bp

Protein-coding Genes

5364 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
helix-turn-helix domain-containing proteinD0T08_06615Not AvailableNegative1653118 - 165399033968.2
protocatechuate 3,4-dioxygenase subunit betaD0T08_06620Not AvailablePositive1654407 - 165511426685.8
protocatechuate 3,4-dioxygenase subunit alphaD0T08_06625Not AvailablePositive1655141 - 165566519860.5
3-carboxy-cis,cis-muconate cycloisomeraseD0T08_06630Not AvailablePositive1655677 - 165699348362.7
3-oxoadipate enol-lactonaseD0T08_06635Not AvailablePositive1657002 - 165814142878.3
4-hydroxybenzoate 3-monooxygenaseD0T08_06640Not AvailablePositive1658128 - 165931844484.8
3-oxoacid coa-transferase subunit bD0T08_06645Not AvailablePositive1659325 - 166067146986.0
3-oxoadipyl-coa thiolaseD0T08_06650Not AvailablePositive1660686 - 166189443195.3
hypothetical proteinD0T08_06655Not AvailablePositive1662037 - 166255820328.3
hypothetical proteinD0T08_06660Not AvailablePositive1662605 - 16628238368.66

Displaying genes 1311 – 1320 of 5421 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.