Tannerella sp. AF04-6

Gram-negative

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Tannerellaceae

Genus

Tannerella

Description

Tannerella sp. AF04-6 is a Gram-negative bacterium distinguished by its single replicon. The organism is cataloged under the accession number QUHW00000000.1. As a member of the Tannerella genus, it is important to note that members of this group are often associated with the human oral microbiome, particularly in the context of periodontal disease. The Gram-negative classification indicates that Tannerella sp. AF04-6 possesses a thin peptidoglycan layer surrounded by an outer membrane, a characteristic that can influence its interactions with the host and its environment. The presence of only one replicon suggests a streamlined genetic organization, which may be advantageous for its survival and adaptability in specific niches. This trait can also provide insights into the organism's evolutionary strategies. In terms of its ecological role, Tannerella sp. AF04-6 may contribute to the microbial diversity within the oral cavity, potentially influencing health and disease states. The interplay between various microbial species, including Tannerella sp. AF04-6, can impact periodontal health, highlighting the significance of studying such bacteria to understand their roles in oral ecology and disease processes. Overall, this bacterium exemplifies the complexity of microbial communities and their potential implications for human health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyTannerellaceae
GenusTannerella
SpeciesTannerella sp. AF04-6
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Tannerella sp. AF04-6 AF04-6.Scaf135, whole genome shotgun

Gene Summary

Adenine Count

1177914 bp

Thymine Count

1164656 bp

Guanine Count

777107 bp

Cytosine Count

777843 bp

Genome Length

3897720 bp

Protein-coding Genes

3192 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tonb-dependent receptorDWV37_00210Not AvailablePositive44888 - 4662466325.6
type i dna topoisomeraseDWV37_00215Not AvailablePositive47008 - 4935388888.4
duf5117 domain-containing proteinDWV37_00220Not AvailablePositive49752 - 5237399099.2
susc/raga family tonb-linked outer membrane proteinDWV37_00225Not AvailablePositive52617 - 55865121634.0
ragb/susd family nutrient uptake outer membrane proteinDWV37_00230Not AvailablePositive55878 - 5719750833.2
t9ss c-terminal target domain-containing proteinDWV37_00235Not AvailablePositive57254 - 5900863011.1
duf2807 domain-containing proteinDWV37_00240Not AvailableNegative59128 - 5986226537.0
trna dihydrouridine synthase dusbDWV37_00245Not AvailableNegative59889 - 6087236454.8
leucine--trna ligaseDWV37_00250Not AvailablePositive61229 - 63997106567.0
yitt family proteinDWV37_00255Not AvailablePositive64328 - 6519731992.0

Displaying genes 41 – 50 of 3254 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.