Ruminococcus sp. TM09-4

Gram-positiveCocci

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus sp. TM09-4 is a Gram-positive bacterium characterized by its cocci shape. This species possesses flagella, which suggests motility, a trait that may provide advantages in its ecological niche. The bacterium has a single replicon, indicating a streamlined genomic organization that can be advantageous for efficient replication and adaptation. The accession number for Ruminococcus sp. TM09-4, QUKB00000000.1, allows for the retrieval of its genetic information from databases, facilitating further research into its characteristics and potential applications. In ecological terms, Ruminococcus species are generally recognized for their roles in the fermentation of carbohydrates in the gastrointestinal tract of ruminants. Their presence is crucial for the breakdown of complex polysaccharides, contributing to the overall efficiency of the digestive process in these animals. The motility provided by flagella may enhance Ruminococcus sp. TM09-4's ability to colonize specific niches within the gut, potentially influencing the microbial community structure and function. This adaptability underscores the importance of Ruminococcus sp. TM09-4 in the complex interactions within the gut microbiome and its role in the digestion and fermentation processes.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus sp. TM09-4
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Ruminococcus sp. TM09-4
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcus sp. TM09-4 TM09-4.Scaf126, whole genome shotgun

Gene Summary

Adenine Count

1220602 bp

Thymine Count

1221373 bp

Guanine Count

861029 bp

Cytosine Count

857651 bp

Genome Length

4161391 bp

Protein-coding Genes

3649 genes

Non-Coding Genes

125 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gnat family n-acetyltransferaseDXD85_13865Not AvailablePositive2917445 - 291792118287.1
cytidylate kinase-like family proteinDXD85_13870Not AvailableNegative2918082 - 291866621876.2
4fe-4s dicluster domain-containing proteinDXD85_13875Not AvailablePositive2918950 - 291977732003.4
laci family transcriptional regulatorDXD85_13885Not AvailableNegative2920231 - 292125639346.2
sugar abc transporter permeaseDXD85_13890Not AvailablePositive2921475 - 292241335215.1
carbohydrate abc transporter permeaseDXD85_13895Not AvailablePositive2922426 - 292331933743.1
abc transporter substrate-binding proteinDXD85_13900Not AvailablePositive2923339 - 292501863906.1
glycoside hydrolase family 32 proteinDXD85_13905Not AvailablePositive2925050 - 292653456868.4
winged helix-turn-helix transcriptional regulatorDXD85_13915Not AvailableNegative2927040 - 292955695119.1
diguanylate cyclaseDXD85_13920Not AvailableNegative2929660 - 293061036249.3

Displaying genes 2671 – 2680 of 3774 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.