Ruminococcus sp. TM09-4

Gram-positiveCocci

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus sp. TM09-4 is a Gram-positive bacterium characterized by its cocci shape. This species possesses flagella, which suggests motility, a trait that may provide advantages in its ecological niche. The bacterium has a single replicon, indicating a streamlined genomic organization that can be advantageous for efficient replication and adaptation. The accession number for Ruminococcus sp. TM09-4, QUKB00000000.1, allows for the retrieval of its genetic information from databases, facilitating further research into its characteristics and potential applications. In ecological terms, Ruminococcus species are generally recognized for their roles in the fermentation of carbohydrates in the gastrointestinal tract of ruminants. Their presence is crucial for the breakdown of complex polysaccharides, contributing to the overall efficiency of the digestive process in these animals. The motility provided by flagella may enhance Ruminococcus sp. TM09-4's ability to colonize specific niches within the gut, potentially influencing the microbial community structure and function. This adaptability underscores the importance of Ruminococcus sp. TM09-4 in the complex interactions within the gut microbiome and its role in the digestion and fermentation processes.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus sp. TM09-4
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Ruminococcus sp. TM09-4
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcus sp. TM09-4 TM09-4.Scaf126, whole genome shotgun

Gene Summary

Adenine Count

1220602 bp

Thymine Count

1221373 bp

Guanine Count

861029 bp

Cytosine Count

857651 bp

Genome Length

4161391 bp

Protein-coding Genes

3649 genes

Non-Coding Genes

125 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
extracellular solute-binding proteinDXD85_13210Not AvailablePositive2776094 - 277738048271.5
helix-turn-helix domain-containing proteinDXD85_13215Not AvailableNegative2777421 - 277832035385.6
carbohydrate abc transporter substrate-binding proteinDXD85_13220Not AvailablePositive2778577 - 277982745578.6
sugar abc transporter permeaseDXD85_13225Not AvailablePositive2780074 - 278097934131.6
carbohydrate abc transporter permeaseDXD85_13230Not AvailablePositive2780993 - 278187132137.1
nucleotidyltransferaseDXD85_13235Not AvailablePositive2782031 - 278295734947.7
aminoglycoside phosphotransferase family proteinDXD85_13240Not AvailablePositive2782968 - 278406241836.9
udp-glucose 4-epimerase galeDXD85_13245Not AvailablePositive2784417 - 278543337127.1
hypothetical proteinDXD85_13250Not AvailableNegative2785538 - 27857628420.87
type ii toxin-antitoxin system rele/pare family toxinDXD85_13255Not AvailableNegative2785768 - 27860109247.38

Displaying genes 2541 – 2550 of 3774 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.