Ruminococcus sp. TM09-4

Gram-positiveCocci

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus sp. TM09-4 is a Gram-positive bacterium characterized by its cocci shape. This species possesses flagella, which suggests motility, a trait that may provide advantages in its ecological niche. The bacterium has a single replicon, indicating a streamlined genomic organization that can be advantageous for efficient replication and adaptation. The accession number for Ruminococcus sp. TM09-4, QUKB00000000.1, allows for the retrieval of its genetic information from databases, facilitating further research into its characteristics and potential applications. In ecological terms, Ruminococcus species are generally recognized for their roles in the fermentation of carbohydrates in the gastrointestinal tract of ruminants. Their presence is crucial for the breakdown of complex polysaccharides, contributing to the overall efficiency of the digestive process in these animals. The motility provided by flagella may enhance Ruminococcus sp. TM09-4's ability to colonize specific niches within the gut, potentially influencing the microbial community structure and function. This adaptability underscores the importance of Ruminococcus sp. TM09-4 in the complex interactions within the gut microbiome and its role in the digestion and fermentation processes.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus sp. TM09-4
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Ruminococcus sp. TM09-4
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcus sp. TM09-4 TM09-4.Scaf126, whole genome shotgun

Gene Summary

Adenine Count

1220602 bp

Thymine Count

1221373 bp

Guanine Count

861029 bp

Cytosine Count

857651 bp

Genome Length

4161391 bp

Protein-coding Genes

3649 genes

Non-Coding Genes

125 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative selenium-dependent hydroxylase accessory protein yqecDXD85_00215Not AvailableNegative47829 - 4854526929.4
ef2563 family selenium-dependent molybdenum hydroxylase system proteinDXD85_00220Not AvailableNegative48505 - 4938331465.3
(2fe-2s)-binding proteinDXD85_00225Not AvailableNegative49380 - 4988018550.5
xanthine dehydrogenase fad-binding subunit xdhbDXD85_00230Not AvailableNegative49877 - 5076132156.7
xanthine dehydrogenase molybdenum-binding subunit xdhaDXD85_00235Not AvailableNegative50777 - 5305083204.3
4fe-4s dicluster domain-containing proteinDXD85_00240Not AvailableNegative53390 - 5388117153.2
selenium-dependent xanthine dehydrogenaseDXD85_00245Not AvailableNegative53884 - 5646693732.1
putative selenate reductase subunit ygfkDXD85_00250Not AvailableNegative56895 - 59894110083.0
putative aminohydrolase ssnaDXD85_00255Not AvailableNegative60008 - 6133948800.6
histidine phosphatase family proteinDXD85_00260Not AvailableNegative61646 - 6224522806.1

Displaying genes 131 – 140 of 3774 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.