Ruminococcus sp. AM28-13

Gram-positiveCocci

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus sp. AM28-13 is a Gram-positive bacterium characterized by its cocci shape. This bacterium possesses flagella, which suggests it has the capability for motility. Ruminococcus sp. AM28-13 has a single replicon, indicating a streamlined genetic structure. The genome of Ruminococcus sp. AM28-13 is accessible through the accession number QTYO00000000.1, which can facilitate further studies on its genetic makeup and potential functionalities. In the context of its ecological role, Ruminococcus species are known to be important in the degradation of complex carbohydrates, playing a significant role in the digestive processes of herbivores. The presence of flagella may enhance its ability to navigate through varied environments, potentially aiding in its colonization of specific niches within the gut microbiome. This motility could provide a competitive advantage in accessing nutrients, which is crucial for survival and proliferation in their ecological context.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus sp. AM28-13
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Ruminococcus sp. AM28-13
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcus sp. AM28-13 AM28-13.Scaf63, whole genome shotgun

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type 1 dockerinDW733_03575Not AvailableNegative833783 - 83555564360.0
hypothetical proteinDW733_03580Not AvailablePositive836024 - 83758354514.6
xre family transcriptional regulatorDW733_03585Not AvailableNegative837679 - 83943066983.3
hypothetical proteinDW733_03590Not AvailablePositive839676 - 84221692018.0
degv family proteinDW733_03595Not AvailableNegative842284 - 84315632246.6
trna (cytidine(34)-2'-o)-methyltransferaseDW733_03600Not AvailableNegative843185 - 84369119623.3
pyridoxamine kinaseDW733_03605Not AvailableNegative843713 - 84457031477.1
ggdef domain-containing proteinDW733_03610Not AvailablePositive844899 - 84597241196.3
hypothetical proteinDW733_03615Not AvailableNegative846021 - 84646416237.5
hypothetical proteinDW733_03620Not AvailablePositive846616 - 84783346849.6

Displaying genes 751 – 760 of 2726 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.