Ruminococcus sp. AF34-12

Gram-positiveCocci

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus sp. AF34-12 is a Gram-positive bacterium characterized by its cocci shape. It possesses flagella, which may contribute to its motility. This organism has a single replicon, indicating a streamlined genomic structure. The specific accession number for this strain is QTVK00000000.1. Ruminococcus species are generally known for their role in the fermentation of complex carbohydrates in the gastrointestinal tract, particularly in ruminants. They are involved in the breakdown of plant polysaccharides, contributing to the overall digestive process. The presence of flagella in Ruminococcus sp. AF34-12 suggests that it may have enhanced mobility, potentially allowing it to navigate its environment more effectively, which could be advantageous in the complex microbial ecosystems of the gut. The ecological role of Ruminococcus sp. AF34-12 is likely significant in the context of nutrient cycling and energy production within the rumen, where it may assist in the degradation of fibrous plant materials. Understanding the traits of this bacterium can provide insights into its contributions to the microbiome of ruminants, highlighting its importance in both animal health and agricultural systems. Further research could elucidate its specific metabolic pathways and interactions within microbial communities.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus sp. AF34-12
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Ruminococcus sp. AF34-12
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcus sp. AF34-12 AF34-12.Scaf70, whole genome shotgun

Gene Summary

Adenine Count

841837 bp

Thymine Count

844688 bp

Guanine Count

621328 bp

Cytosine Count

630283 bp

Genome Length

2938240 bp

Protein-coding Genes

2593 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aec family transporterDWZ62_13190Not AvailablePositive2882081 - 288297132564.1
duf2461 domain-containing proteinDWZ62_13195Not AvailableNegative2883407 - 288414729163.8
flavodoxin family proteinDWZ62_13200Not AvailableNegative2884200 - 288473619754.8
1-deoxy-d-xylulose-5-phosphate synthaseDWZ62_13205Not AvailableNegative2884753 - 288650464383.7
hypothetical proteinDWZ62_13210Not AvailablePositive2886890 - 28870756901.09
hypothetical proteinDWZ62_13215Not AvailableNegative2887072 - 288775826233.5
Trna-pseudoNot AvailableNot AvailablePositive2888058 - 2888133Not Available
hypothetical proteinDWZ62_13220Not AvailableNegative2888117 - 288897032831.4
type ii toxin-antitoxin system rele/pare family toxinDWZ62_13225Not AvailableNegative2889082 - 288939012062.9
type ii toxin-antitoxin system phd/yefm family antitoxinDWZ62_13230Not AvailableNegative2889390 - 288965910120.0

Displaying genes 2581 – 2590 of 2640 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.