Ruminococcus sp. AF34-12

Gram-positiveCocci

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus sp. AF34-12 is a Gram-positive bacterium characterized by its cocci shape. It possesses flagella, which may contribute to its motility. This organism has a single replicon, indicating a streamlined genomic structure. The specific accession number for this strain is QTVK00000000.1. Ruminococcus species are generally known for their role in the fermentation of complex carbohydrates in the gastrointestinal tract, particularly in ruminants. They are involved in the breakdown of plant polysaccharides, contributing to the overall digestive process. The presence of flagella in Ruminococcus sp. AF34-12 suggests that it may have enhanced mobility, potentially allowing it to navigate its environment more effectively, which could be advantageous in the complex microbial ecosystems of the gut. The ecological role of Ruminococcus sp. AF34-12 is likely significant in the context of nutrient cycling and energy production within the rumen, where it may assist in the degradation of fibrous plant materials. Understanding the traits of this bacterium can provide insights into its contributions to the microbiome of ruminants, highlighting its importance in both animal health and agricultural systems. Further research could elucidate its specific metabolic pathways and interactions within microbial communities.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus sp. AF34-12
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Ruminococcus sp. AF34-12
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcus sp. AF34-12 AF34-12.Scaf70, whole genome shotgun

Gene Summary

Adenine Count

841837 bp

Thymine Count

844688 bp

Guanine Count

621328 bp

Cytosine Count

630283 bp

Genome Length

2938240 bp

Protein-coding Genes

2593 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysr family transcriptional regulatorDWZ62_10935Not AvailablePositive2400586 - 240150634657.6
hypothetical proteinDWZ62_10940Not AvailablePositive2401570 - 240212120317.0
glutamyl-trna reductaseDWZ62_10945Not AvailablePositive2402118 - 240323041691.3
bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelataseDWZ62_10950Not AvailablePositive2403227 - 240385322905.9
hydroxymethylbilane synthaseDWZ62_10955Not AvailablePositive2403850 - 240471031491.0
uroporphyrinogen-iii c-methyltransferaseDWZ62_10960Not AvailablePositive2404707 - 240616751937.5
porphobilinogen synthaseDWZ62_10965Not AvailablePositive2406181 - 240714935814.2
glutamate-1-semialdehyde-2,1-aminomutaseDWZ62_10970Not AvailablePositive2407151 - 240841045427.6
hydrogenase expression/formation protein hypeDWZ62_10975Not AvailableNegative2408646 - 240965335065.2
hydrogenase formation protein hypdDWZ62_10980Not AvailableNegative2409682 - 241073437616.9

Displaying genes 2151 – 2160 of 2640 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.