Ruminococcus sp. AF25-23LB

Gram-positiveCocci

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus sp. AF25-23LB is a Gram-positive bacterium characterized by its cocci shape and the presence of flagella. This organism possesses a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability and efficiency in its ecological niche. The presence of flagella suggests that Ruminococcus sp. AF25-23LB has the capability for motility, which may play a significant role in its ability to colonize and thrive in various environments, particularly within the complex microbial communities of the gastrointestinal tract. This motility could facilitate interactions with other microorganisms and the host, potentially influencing digestion and nutrient absorption. The accession number QUFL00000000.1 provides a reference for researchers interested in the genomic and functional analysis of this strain. Understanding the genetic makeup of Ruminococcus sp. AF25-23LB can shed light on its metabolic pathways and its role in the gut microbiome. Biologically and ecologically, Ruminococcus species are often associated with the fermentation of complex carbohydrates, contributing to the breakdown of dietary fibers and the production of short-chain fatty acids, which are beneficial for host health. Therefore, Ruminococcus sp. AF25-23LB may play a crucial role in maintaining gut health and supporting the overall microbial balance, underlining its potential importance in both microbiological research and applications in health and nutrition.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus sp. AF25-23LB
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Ruminococcus sp. AF25-23LB
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcus sp. AF25-23LB AF25-23LB.Scaf287, whole genome shotgun

Gene Summary

Adenine Count

1150724 bp

Thymine Count

1169413 bp

Guanine Count

807488 bp

Cytosine Count

827679 bp

Genome Length

3955304 bp

Protein-coding Genes

3249 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
precorrin-4 c(11)-methyltransferaseDWY47_04170Not AvailableNegative936167 - 93694328278.9
cobalamin biosynthesis protein cbidDWY47_04175Not AvailableNegative937042 - 93820241843.9
mate family efflux transporterDWY47_04180Not AvailableNegative938535 - 93987848769.2
rlua family pseudouridine synthaseDWY47_04185Not AvailablePositive940237 - 94113633903.9
type iii pantothenate kinaseDWY47_04190Not AvailableNegative941230 - 94199427160.6
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase coabcDWY47_04195Not AvailableNegative942032 - 94324043773.1
peptidylprolyl isomeraseDWY47_04205Not AvailableNegative944390 - 94520828819.4
s-ribosylhomocysteine lyaseDWY47_04210Not AvailablePositive945446 - 94592518136.9
sh3 domain-containing proteinDWY47_04215Not AvailableNegative946150 - 94663216411.7
xdhc and coxi family proteinDWY47_04220Not AvailableNegative946948 - 94794336695.9

Displaying genes 741 – 750 of 3311 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.