Ruminococcus sp. AF25-23LB

Gram-positiveCocci

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus sp. AF25-23LB is a Gram-positive bacterium characterized by its cocci shape and the presence of flagella. This organism possesses a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability and efficiency in its ecological niche. The presence of flagella suggests that Ruminococcus sp. AF25-23LB has the capability for motility, which may play a significant role in its ability to colonize and thrive in various environments, particularly within the complex microbial communities of the gastrointestinal tract. This motility could facilitate interactions with other microorganisms and the host, potentially influencing digestion and nutrient absorption. The accession number QUFL00000000.1 provides a reference for researchers interested in the genomic and functional analysis of this strain. Understanding the genetic makeup of Ruminococcus sp. AF25-23LB can shed light on its metabolic pathways and its role in the gut microbiome. Biologically and ecologically, Ruminococcus species are often associated with the fermentation of complex carbohydrates, contributing to the breakdown of dietary fibers and the production of short-chain fatty acids, which are beneficial for host health. Therefore, Ruminococcus sp. AF25-23LB may play a crucial role in maintaining gut health and supporting the overall microbial balance, underlining its potential importance in both microbiological research and applications in health and nutrition.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus sp. AF25-23LB
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Ruminococcus sp. AF25-23LB
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcus sp. AF25-23LB AF25-23LB.Scaf287, whole genome shotgun

Gene Summary

Adenine Count

1150724 bp

Thymine Count

1169413 bp

Guanine Count

807488 bp

Cytosine Count

827679 bp

Genome Length

3955304 bp

Protein-coding Genes

3249 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sugar abc transporter atp-binding proteinDWY47_02200Not AvailableNegative487784 - 48929555954.8
sugar abc transporter substrate-binding proteinDWY47_02210Not AvailableNegative490475 - 49145236113.4
dna-binding response regulatorDWY47_02220Not AvailableNegative493240 - 49485961951.6
fucose isomeraseDWY47_02225Not AvailablePositive495234 - 49567716416.9
l-fucose isomeraseDWY47_02230Not AvailableNegative495974 - 49777066349.9
hypothetical proteinDWY47_02235Not AvailableNegative497814 - 4980448453.21
arac family transcriptional regulatorDWY47_02240Not AvailablePositive498259 - 49910733610.0
cob(i)yrinic acid a,c-diamide adenosyltransferaseDWY47_02245Not AvailableNegative499227 - 50030939392.1
iron-containing alcohol dehydrogenaseDWY47_02250Not AvailableNegative500378 - 50152941881.6
deor/glpr transcriptional regulatorDWY47_02255Not AvailableNegative501554 - 50231828500.4

Displaying genes 391 – 400 of 3311 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.