Ruminococcus sp. AF25-23LB

Gram-positiveCocci

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus sp. AF25-23LB is a Gram-positive bacterium characterized by its cocci shape and the presence of flagella. This organism possesses a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability and efficiency in its ecological niche. The presence of flagella suggests that Ruminococcus sp. AF25-23LB has the capability for motility, which may play a significant role in its ability to colonize and thrive in various environments, particularly within the complex microbial communities of the gastrointestinal tract. This motility could facilitate interactions with other microorganisms and the host, potentially influencing digestion and nutrient absorption. The accession number QUFL00000000.1 provides a reference for researchers interested in the genomic and functional analysis of this strain. Understanding the genetic makeup of Ruminococcus sp. AF25-23LB can shed light on its metabolic pathways and its role in the gut microbiome. Biologically and ecologically, Ruminococcus species are often associated with the fermentation of complex carbohydrates, contributing to the breakdown of dietary fibers and the production of short-chain fatty acids, which are beneficial for host health. Therefore, Ruminococcus sp. AF25-23LB may play a crucial role in maintaining gut health and supporting the overall microbial balance, underlining its potential importance in both microbiological research and applications in health and nutrition.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus sp. AF25-23LB
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Ruminococcus sp. AF25-23LB
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcus sp. AF25-23LB AF25-23LB.Scaf287, whole genome shotgun

Gene Summary

Adenine Count

1150724 bp

Thymine Count

1169413 bp

Guanine Count

807488 bp

Cytosine Count

827679 bp

Genome Length

3955304 bp

Protein-coding Genes

3249 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Tmrna,resume consensus sequence (at 86): tataaacgcagacgaacaNot AvailableNot AvailablePositive328623 - 328968Not Available
uma2 family endonucleaseDWY47_01405Not AvailablePositive329423 - 32997121017.0
elongation factor pDWY47_01415Not AvailableNegative331335 - 33189220569.5
shikimate kinaseDWY47_01420Not AvailableNegative332036 - 33256019805.3
yqeg family had iiia-type phosphataseDWY47_01425Not AvailableNegative332557 - 33306019290.0
citrate/2-methylcitrate synthaseDWY47_01430Not AvailableNegative333155 - 33451651249.9
nadp-specific glutamate dehydrogenaseDWY47_01435Not AvailablePositive335102 - 33643648639.4
transcriptional repressor nrdrDWY47_01440Not AvailableNegative336573 - 33702217550.0
ylmc/ymxh family sporulation proteinDWY47_01445Not AvailablePositive337303 - 3375579497.67
rna polymerase sporulation sigma factor siggDWY47_01450Not AvailablePositive337777 - 33855630044.3

Displaying genes 251 – 260 of 3311 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.