Ruminococcus sp. AF25-13

Gram-positiveCocci

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus sp. AF25-13 is a Gram-positive bacterium characterized by its cocci shape. This microorganism possesses flagella, indicating that it has the ability to move in its environment. Genetically, Ruminococcus sp. AF25-13 has one replicon, which is the segment of DNA that can replicate independently within the cell. The accession number for Ruminococcus sp. AF25-13 is QTWH00000000.1, which serves as a reference for genomic information pertaining to this strain. The presence of flagella might suggest an ecological role in environments where mobility is advantageous, potentially allowing Ruminococcus sp. AF25-13 to navigate through complex ecosystems such as the gastrointestinal tracts of various hosts. Ruminococcus species are often involved in the fermentation of complex carbohydrates, contributing to the breakdown of dietary fibers. This process is essential for nutrient availability and energy production in ruminants and other herbivores. The mobility conferred by flagella may enhance the bacterium's ability to colonize specific niches within these environments, thus playing a critical role in the microbiome's structure and function. Overall, Ruminococcus sp. AF25-13 exemplifies the intricate relationship between microbial traits and ecological roles in the digestive processes of host organisms.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus sp. AF25-13
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Ruminococcus sp. AF25-13
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcus sp. AF25-13 AF25-13.Scaf60, whole genome shotgun

Gene Summary

Adenine Count

1073747 bp

Thymine Count

1026466 bp

Guanine Count

753525 bp

Cytosine Count

685546 bp

Genome Length

3539634 bp

Protein-coding Genes

3120 genes

Non-Coding Genes

114 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cadmium-translocating p-type atpaseDWY35_11075Not AvailableNegative2364435 - 236632167810.2
heavy-metal-associated domain-containing proteinDWY35_11080Not AvailableNegative2366335 - 23665538143.81
arsr family transcriptional regulatorDWY35_11085Not AvailablePositive2366931 - 236729914011.0
nad(+) diphosphataseDWY35_11090Not AvailableNegative2367433 - 236826933019.2
signal peptidase iiDWY35_11095Not AvailableNegative2368266 - 236874217625.9
nad-dependent dna ligase ligaDWY35_11100Not AvailableNegative2368805 - 237076674134.1
23s rrna pseudouridine(2604) synthase rlufDWY35_11105Not AvailableNegative2370763 - 237158731415.3
hypothetical proteinDWY35_11110Not AvailableNegative2371580 - 237273443701.3
mboat family proteinDWY35_11115Not AvailableNegative2372778 - 237418753419.4
duf4358 domain-containing proteinDWY35_11120Not AvailableNegative2374200 - 237468518234.0

Displaying genes 2181 – 2190 of 3234 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.