Ruminococcus sp. AF25-13

Gram-positiveCocci

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus sp. AF25-13 is a Gram-positive bacterium characterized by its cocci shape. This microorganism possesses flagella, indicating that it has the ability to move in its environment. Genetically, Ruminococcus sp. AF25-13 has one replicon, which is the segment of DNA that can replicate independently within the cell. The accession number for Ruminococcus sp. AF25-13 is QTWH00000000.1, which serves as a reference for genomic information pertaining to this strain. The presence of flagella might suggest an ecological role in environments where mobility is advantageous, potentially allowing Ruminococcus sp. AF25-13 to navigate through complex ecosystems such as the gastrointestinal tracts of various hosts. Ruminococcus species are often involved in the fermentation of complex carbohydrates, contributing to the breakdown of dietary fibers. This process is essential for nutrient availability and energy production in ruminants and other herbivores. The mobility conferred by flagella may enhance the bacterium's ability to colonize specific niches within these environments, thus playing a critical role in the microbiome's structure and function. Overall, Ruminococcus sp. AF25-13 exemplifies the intricate relationship between microbial traits and ecological roles in the digestive processes of host organisms.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus sp. AF25-13
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Ruminococcus sp. AF25-13
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcus sp. AF25-13 AF25-13.Scaf60, whole genome shotgun

Gene Summary

Adenine Count

1073747 bp

Thymine Count

1026466 bp

Guanine Count

753525 bp

Cytosine Count

685546 bp

Genome Length

3539634 bp

Protein-coding Genes

3120 genes

Non-Coding Genes

114 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf3887 domain-containing proteinDWY35_04800Not AvailablePositive1045176 - 104594028085.3
acetyl-coa carboxylase biotin carboxyl carrier protein subunitDWY35_04805Not AvailablePositive1045957 - 104632511765.1
sodium ion-translocating decarboxylase subunit betaDWY35_04810Not AvailablePositive1046351 - 104750240462.9
oxaloacetate decarboxylase subunit alphaDWY35_04815Not AvailablePositive1047520 - 104893252628.3
aminopeptidase p family proteinDWY35_04820Not AvailablePositive1049108 - 105091068331.2
murr/rpir family transcriptional regulatorDWY35_04825Not AvailablePositive1051038 - 105195834294.3
nad(p)/fad-dependent oxidoreductaseDWY35_04830Not AvailablePositive1051962 - 105319745327.8
(d)cmp kinaseDWY35_04835Not AvailablePositive1053322 - 105398124471.5
4-hydroxy-3-methylbut-2-enyl diphosphate reductaseDWY35_04840Not AvailablePositive1054002 - 105485631923.1
30s ribosomal protein s1DWY35_04845Not AvailablePositive1054837 - 105591339352.9

Displaying genes 1031 – 1040 of 3234 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.