Parabacteroides sp. AM44-16

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Tannerellaceae

Genus

Parabacteroides

Description

Parabacteroides sp. AM44-16 is characterized as a rod-shaped bacterium. It possesses flagella, which suggests a capability for motility. This feature may play a significant role in its ecological interactions, as motility can enhance the organism's ability to navigate its environment and potentially colonize host tissues or interact with other microbial species. The genome of Parabacteroides sp. AM44-16 is noted to have a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability and efficiency in resource utilization. The accessions for this strain are cataloged under QTNC00000000.1, making it accessible for further genomic studies and comparisons with related species. Biologically, the presence of a single replicon could suggest a specialization in certain environments, potentially allowing Parabacteroides sp. AM44-16 to thrive in specific ecological niches. Its motility, combined with its genetic configuration, may allow this bacterium to effectively compete for resources and establish interactions within its microbial community. Understanding these traits can provide insights into the role of Parabacteroides sp. AM44-16 in its ecosystem, particularly in relation to its potential functions in digestion and nutrient cycling within host organisms or its contributions to microbiome diversity.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyTannerellaceae
GenusParabacteroides
SpeciesParabacteroides sp. AM44-16
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Parabacteroides sp. AM44-16 AM44-16.Scaf94, whole genome shotgun

Gene Summary

Adenine Count

1492170 bp

Thymine Count

1492251 bp

Guanine Count

1209610 bp

Cytosine Count

1225952 bp

Genome Length

5419983 bp

Protein-coding Genes

3919 genes

Non-Coding Genes

94 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycoside hydrolase xylanaseDW945_05850Not AvailablePositive1466939 - 146792235963.1
4-hydroxy-tetrahydrodipicolinate synthaseDW945_05865Not AvailablePositive1470490 - 147138332743.8
efflux rnd transporter periplasmic adaptor subunitDW945_05875Not AvailablePositive1475926 - 147685233377.7
histidine kinaseDW945_05880Not AvailablePositive1476849 - 147791040797.0
dna-binding response regulatorDW945_05885Not AvailablePositive1477907 - 147867128812.9
sensor histidine kinaseDW945_05890Not AvailableNegative1478666 - 148073579856.5
two-component sensor histidine kinaseDW945_05895Not AvailableNegative1480816 - 148258568584.1
n-acetylmuramoyl-l-alanine amidaseDW945_05905Not AvailableNegative1483466 - 148445537666.3
3'-5' exonucleaseDW945_05910Not AvailableNegative1484533 - 148511122603.1
cold shock domain-containing proteinDW945_05915Not AvailablePositive1485357 - 148580316968.0

Displaying genes 1021 – 1030 of 4013 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.