Parabacteroides sp. AM08-6

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Tannerellaceae

Genus

Parabacteroides

Description

Parabacteroides sp. AM08-6 is a Gram-negative bacterium characterized by its rod-shaped morphology. This species possesses flagella, which may contribute to its motility and ability to navigate its environment. Parabacteroides sp. AM08-6 is notable for having a single replicon, indicating a streamlined genomic organization that may reflect its adaptability and efficiency in various ecological niches. In terms of genetic data, the accession number for this strain is QRMP00000000.1, which provides a reference for researchers interested in studying its genomic features and potential applications. The existence of a single replicon could suggest a relatively simple genetic architecture that may be advantageous for rapid growth and reproduction in specific environments. Biologically, the traits of Parabacteroides sp. AM08-6 may facilitate its role in microbial communities, particularly in gut microbiota, where bacteria can influence digestion and host health. The presence of flagella could enhance its ability to colonize host tissues or compete for resources within the microbiome. As a member of the Parabacteroides genus, this strain may participate in anaerobic fermentation processes, contributing to the breakdown of complex carbohydrates and production of short-chain fatty acids, which are important for host metabolism and health. Overall, the specific traits of Parabacteroides sp. AM08-6, including its Gram-negative status, rod shape, flagella presence, and genetic organization, highlight its potential ecological role and biological significance in microbial ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyTannerellaceae
GenusParabacteroides
SpeciesParabacteroides sp. AM08-6
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Parabacteroides sp. AM08-6
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Parabacteroides sp. AM08-6 AM08-6.Scaf94, whole genome shotgun

Gene Summary

Adenine Count

1230486 bp

Thymine Count

1218181 bp

Guanine Count

864998 bp

Cytosine Count

875621 bp

Genome Length

4189784 bp

Protein-coding Genes

3410 genes

Non-Coding Genes

95 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
2,3-diphosphoglycerate-dependent phosphoglycerate mutaseDW103_07810Not AvailablePositive1922608 - 192336029135.7
sigma-54-dependent fis family transcriptional regulatorDW103_07815Not AvailablePositive1923651 - 192500350814.4
ghkl domain-containing proteinDW103_07820Not AvailablePositive1925015 - 192633149859.3
divalent metal cation transporterDW103_07825Not AvailablePositive1926444 - 192769745411.9
4fe-4s dicluster domain-containing proteinDW103_07830Not AvailablePositive1927823 - 19280508179.14
3-methyl-2-oxobutanoate dehydrogenase subunit vorbDW103_07835Not AvailablePositive1928058 - 192913739271.7
2-oxoglutarate oxidoreductaseDW103_07840Not AvailablePositive1929415 - 193017927770.8
2-oxoglutarate ferredoxin oxidoreductase subunit gammaDW103_07845Not AvailablePositive1930196 - 193074119866.7
hypothetical proteinDW103_07850Not AvailablePositive1930864 - 193296079575.8
glutamine abc transporter substrate-binding proteinDW103_07855Not AvailablePositive1932966 - 193379031375.9

Displaying genes 1551 – 1560 of 3505 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.