Agarivorans sp. Toyoura001

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Alteromonadaceae

Genus

Agarivorans

Description

Agarivorans sp. Toyoura001 is a Gram-negative, rod-shaped bacterium. This organism is notable for having a single replicon, which suggests a streamlined genomic structure that may influence its reproductive and metabolic capabilities. The accession number for Agarivorans sp. Toyoura001 is BJEQ00000000.1, indicating the availability of its genomic data for further study. The classification of Agarivorans sp. in the context of its ecological role is particularly interesting. As members of the Agarivorans genus, these bacteria are known for their ability to degrade agar, a polysaccharide derived from red algae. This characteristic not only highlights their potential role in nutrient cycling within marine environments but also suggests their importance in the degradation of algal biomass. In conclusion, Agarivorans sp. Toyoura001, with its Gram-negative, rod-shaped morphology and single replicon, may play a significant role in the decomposition processes in its habitat, contributing to the overall health and balance of marine ecosystems. Further studies on its metabolic pathways could provide valuable insights into its ecological functions and interactions within marine microbiomes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyAlteromonadaceae
GenusAgarivorans
SpeciesAgarivorans sp. Toyoura001
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agarivorans sp. Toyoura001 DNA, sequence60, whole genome shotgun

Gene Summary

Adenine Count

1309845 bp

Thymine Count

1292608 bp

Guanine Count

1019485 bp

Cytosine Count

1044271 bp

Genome Length

4666209 bp

Protein-coding Genes

4257 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
udp-glucose 4-epimeraseAHAT_38020Not AvailableNegative4147179 - 414819236730.6
7-carboxy-7-deazaguanine synthaseAHAT_38030Not AvailableNegative4148243 - 414891724874.9
7-cyano-7-deazaguanine synthaseAHAT_38040Not AvailablePositive4148984 - 414964024265.9
hypothetical proteinAHAT_38050Not AvailablePositive4149643 - 415022121770.2
orotidine 5'-phosphate decarboxylaseAHAT_38060Not AvailableNegative4150210 - 415090824936.3
lipopolysaccharide assembly protein bAHAT_38070Not AvailableNegative4150913 - 415208243910.8
putative lipopolysaccharide assembly protein aAHAT_38080Not AvailableNegative4152082 - 415237210811.6
integration host factor subunit betaAHAT_38090Not AvailableNegative4152466 - 415275010611.8
30s ribosomal protein s1AHAT_38100Not AvailableNegative4152863 - 415453661138.5
cytidylate kinaseAHAT_38110Not AvailableNegative4154642 - 415532224772.3

Displaying genes 3861 – 3870 of 4326 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.