Agarivorans sp. Toyoura001

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Alteromonadaceae

Genus

Agarivorans

Description

Agarivorans sp. Toyoura001 is a Gram-negative, rod-shaped bacterium. This organism is notable for having a single replicon, which suggests a streamlined genomic structure that may influence its reproductive and metabolic capabilities. The accession number for Agarivorans sp. Toyoura001 is BJEQ00000000.1, indicating the availability of its genomic data for further study. The classification of Agarivorans sp. in the context of its ecological role is particularly interesting. As members of the Agarivorans genus, these bacteria are known for their ability to degrade agar, a polysaccharide derived from red algae. This characteristic not only highlights their potential role in nutrient cycling within marine environments but also suggests their importance in the degradation of algal biomass. In conclusion, Agarivorans sp. Toyoura001, with its Gram-negative, rod-shaped morphology and single replicon, may play a significant role in the decomposition processes in its habitat, contributing to the overall health and balance of marine ecosystems. Further studies on its metabolic pathways could provide valuable insights into its ecological functions and interactions within marine microbiomes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyAlteromonadaceae
GenusAgarivorans
SpeciesAgarivorans sp. Toyoura001
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agarivorans sp. Toyoura001 DNA, sequence60, whole genome shotgun

Gene Summary

Adenine Count

1309845 bp

Thymine Count

1292608 bp

Guanine Count

1019485 bp

Cytosine Count

1044271 bp

Genome Length

4666209 bp

Protein-coding Genes

4257 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
amino acid abc transporter substrate-binding proteinAHAT_19380Not AvailablePositive2133104 - 213412936465.2
amino acid abc transporter permeaseAHAT_19390Not AvailablePositive2134202 - 213539843455.5
amino acid abc transporter permeaseAHAT_19400Not AvailablePositive2135400 - 213649140684.8
arginine abc transporter atp-binding proteinAHAT_19410Not AvailablePositive2136506 - 213726428370.6
integration host factor subunit alphaAHAT_19420Not AvailableNegative2137323 - 213761610979.0
phenylalanine--trna ligase beta subunitAHAT_19430Not AvailableNegative2137619 - 214000687119.8
phenylalanine--trna ligase alpha subunitAHAT_19440Not AvailableNegative2140019 - 214099937087.2
50s ribosomal protein l20AHAT_19450Not AvailableNegative2141178 - 214153113452.6
50s ribosomal protein l35AHAT_19460Not AvailableNegative2141550 - 21417477355.38
translation initiation factor if-3AHAT_19470Not AvailableNegative2141848 - 214227015952.5

Displaying genes 1971 – 1980 of 4326 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.