Agarivorans sp. Toyoura001

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Alteromonadaceae

Genus

Agarivorans

Description

Agarivorans sp. Toyoura001 is a Gram-negative, rod-shaped bacterium. This organism is notable for having a single replicon, which suggests a streamlined genomic structure that may influence its reproductive and metabolic capabilities. The accession number for Agarivorans sp. Toyoura001 is BJEQ00000000.1, indicating the availability of its genomic data for further study. The classification of Agarivorans sp. in the context of its ecological role is particularly interesting. As members of the Agarivorans genus, these bacteria are known for their ability to degrade agar, a polysaccharide derived from red algae. This characteristic not only highlights their potential role in nutrient cycling within marine environments but also suggests their importance in the degradation of algal biomass. In conclusion, Agarivorans sp. Toyoura001, with its Gram-negative, rod-shaped morphology and single replicon, may play a significant role in the decomposition processes in its habitat, contributing to the overall health and balance of marine ecosystems. Further studies on its metabolic pathways could provide valuable insights into its ecological functions and interactions within marine microbiomes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyAlteromonadaceae
GenusAgarivorans
SpeciesAgarivorans sp. Toyoura001
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agarivorans sp. Toyoura001 DNA, sequence60, whole genome shotgun

Gene Summary

Adenine Count

1309845 bp

Thymine Count

1292608 bp

Guanine Count

1019485 bp

Cytosine Count

1044271 bp

Genome Length

4666209 bp

Protein-coding Genes

4257 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
2-oxoglutarate dehydrogenase subunit e1AHAT_17320Not AvailableNegative1910818 - 1913619105155.0
succinate dehydrogenase iron-sulfur subunitAHAT_17330Not AvailableNegative1913744 - 191445726419.9
succinate dehydrogenase flavoprotein subunitAHAT_17340Not AvailableNegative1914469 - 191623864466.3
succinate dehydrogenase hydrophobic membrane anchor subunitAHAT_17350Not AvailableNegative1916244 - 191658512769.9
succinate dehydrogenase cytochrome b556 large subunitAHAT_17360Not AvailableNegative1916579 - 191695613759.2
citrate synthaseAHAT_17370Not AvailablePositive1917359 - 191863047771.3
hypothetical proteinAHAT_17380Not AvailableNegative1918701 - 191917718660.8
3-deoxy-manno-octulosonate cytidylyltransferaseAHAT_17390Not AvailableNegative1919210 - 191994427305.6
upf0434 proteinAHAT_17400Not AvailableNegative1919941 - 19201297005.6
tetraacyldisaccharide 4'-kinaseAHAT_17410Not AvailableNegative1920113 - 192109936656.9

Displaying genes 1761 – 1770 of 4326 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.