Chitinophaga silvatica

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga silvatica is a Gram-negative bacterium characterized by its rod shape. It possesses a single replicon, indicating a relatively simple genetic structure compared to organisms with multiple replicons. The genomic data for Chitinophaga silvatica is cataloged under the accession number QPMM00000000.1, which provides a basis for further study and characterization of this species. As a member of the Chitinophaga genus, this bacterium is likely to play a role in the degradation of chitin, a biopolymer found in the exoskeletons of arthropods and in the cell walls of fungi. The ability to degrade chitin is significant in ecological contexts, as it contributes to nutrient cycling and the breakdown of organic matter in various environments. Chitinophaga silvatica's role in these processes could be vital for maintaining soil health and supporting microbial diversity. In summary, Chitinophaga silvatica is a Gram-negative, rod-shaped bacterium with a single replicon. Its potential for chitin degradation suggests ecological importance in nutrient recycling and soil ecosystem dynamics. Further research into its metabolic pathways and ecological interactions could provide deeper insights into its contributions to environmental sustainability.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga silvatica
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga silvatica strain GDMCC 1.1288 contig25, whole genome

Gene Summary

Adenine Count

2045921 bp

Thymine Count

2053541 bp

Guanine Count

1380634 bp

Cytosine Count

1330489 bp

Genome Length

6810585 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinDVR12_02945Not AvailablePositive757348 - 75851144278.3
hypothetical proteinDVR12_02950Not AvailableNegative758656 - 75921620813.0
rna polymerase sigma factorDVR12_02955Not AvailablePositive759771 - 76036423169.8
duf4974 domain-containing proteinDVR12_02960Not AvailablePositive760462 - 76167344920.5
susc/raga family tonb-linked outer membrane proteinDVR12_02965Not AvailablePositive761865 - 765536135289.0
ragb/susd family nutrient uptake outer membrane proteinDVR12_02970Not AvailablePositive765547 - 76697153813.2
hypothetical proteinDVR12_02975Not AvailablePositive766998 - 76792735382.2
abc transporter atp-binding proteinDVR12_02980Not AvailablePositive768059 - 76898834871.3
abc transporterDVR12_02985Not AvailablePositive769013 - 77131985590.3
dna mismatch repair proteinDVR12_02990Not AvailablePositive771333 - 77268250745.7

Displaying genes 591 – 600 of 5454 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.