Chitinophaga silvatica

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga silvatica is a Gram-negative bacterium characterized by its rod shape. It possesses a single replicon, indicating a relatively simple genetic structure compared to organisms with multiple replicons. The genomic data for Chitinophaga silvatica is cataloged under the accession number QPMM00000000.1, which provides a basis for further study and characterization of this species. As a member of the Chitinophaga genus, this bacterium is likely to play a role in the degradation of chitin, a biopolymer found in the exoskeletons of arthropods and in the cell walls of fungi. The ability to degrade chitin is significant in ecological contexts, as it contributes to nutrient cycling and the breakdown of organic matter in various environments. Chitinophaga silvatica's role in these processes could be vital for maintaining soil health and supporting microbial diversity. In summary, Chitinophaga silvatica is a Gram-negative, rod-shaped bacterium with a single replicon. Its potential for chitin degradation suggests ecological importance in nutrient recycling and soil ecosystem dynamics. Further research into its metabolic pathways and ecological interactions could provide deeper insights into its contributions to environmental sustainability.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga silvatica
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga silvatica strain GDMCC 1.1288 contig25, whole genome

Gene Summary

Adenine Count

2045921 bp

Thymine Count

2053541 bp

Guanine Count

1380634 bp

Cytosine Count

1330489 bp

Genome Length

6810585 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
zf-hc2 domain-containing proteinDVR12_01185Not AvailableNegative318246 - 31859913834.1
sigma-70 family rna polymerase sigma factorDVR12_01190Not AvailableNegative318618 - 31919622843.7
hypothetical proteinDVR12_01195Not AvailableNegative319268 - 32039242099.1
sigma-70 family rna polymerase sigma factorDVR12_01200Not AvailableNegative320382 - 32095722037.7
hypothetical proteinDVR12_01205Not AvailablePositive321050 - 32182328922.7
inorganic diphosphataseDVR12_01210Not AvailableNegative322040 - 32257620309.4
duf4878 domain-containing proteinDVR12_01215Not AvailableNegative322780 - 32325917687.9
phoh family proteinDVR12_01220Not AvailableNegative323475 - 32443135392.8
5-(carboxyamino)imidazole ribonucleotide mutaseDVR12_01225Not AvailableNegative324532 - 32498715672.3
pas domain s-box proteinDVR12_01230Not AvailablePositive325241 - 327886101373.0

Displaying genes 241 – 250 of 5454 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.