Chitinophaga silvatica

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga silvatica is a Gram-negative bacterium characterized by its rod shape. It possesses a single replicon, indicating a relatively simple genetic structure compared to organisms with multiple replicons. The genomic data for Chitinophaga silvatica is cataloged under the accession number QPMM00000000.1, which provides a basis for further study and characterization of this species. As a member of the Chitinophaga genus, this bacterium is likely to play a role in the degradation of chitin, a biopolymer found in the exoskeletons of arthropods and in the cell walls of fungi. The ability to degrade chitin is significant in ecological contexts, as it contributes to nutrient cycling and the breakdown of organic matter in various environments. Chitinophaga silvatica's role in these processes could be vital for maintaining soil health and supporting microbial diversity. In summary, Chitinophaga silvatica is a Gram-negative, rod-shaped bacterium with a single replicon. Its potential for chitin degradation suggests ecological importance in nutrient recycling and soil ecosystem dynamics. Further research into its metabolic pathways and ecological interactions could provide deeper insights into its contributions to environmental sustainability.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga silvatica
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga silvatica strain GDMCC 1.1288 contig25, whole genome

Gene Summary

Adenine Count

2045921 bp

Thymine Count

2053541 bp

Guanine Count

1380634 bp

Cytosine Count

1330489 bp

Genome Length

6810585 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ligase-associated dna damage response endonuclease pdemDVR12_05355Not AvailableNegative1372301 - 137294824703.6
ligase-associated dna damage response dexh box helicaseDVR12_05360Not AvailableNegative1372987 - 137544091841.8
ncs2 family permeaseDVR12_05365Not AvailablePositive1375491 - 137681346094.3
ld-carboxypeptidaseDVR12_05370Not AvailableNegative1376814 - 137784537911.7
hypothetical proteinDVR12_05375Not AvailableNegative1377869 - 137825514849.1
helix-turn-helix domain-containing proteinDVR12_05380Not AvailableNegative1378327 - 137917232923.9
hypothetical proteinDVR12_05385Not AvailablePositive1379233 - 137982021575.2
hypothetical proteinDVR12_05390Not AvailableNegative1379829 - 138052426021.6
hypothetical proteinDVR12_05395Not AvailableNegative1380538 - 138121825592.6
hypothetical proteinDVR12_05400Not AvailableNegative1381275 - 138197626116.0

Displaying genes 1071 – 1080 of 5454 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.