Sinomicrobium soli

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Sinomicrobium

Description

Sinomicrobium soli is a Gram-negative, rod-shaped bacterium characterized by its single replicon. The organism has been cataloged under the accession number QLNV00000000.1, which provides a reference point for genetic and genomic studies. The Gram-negative classification indicates that Sinomicrobium soli possesses a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which can influence its interactions with the environment, including susceptibility to antibiotics and its overall ecological role. The rod shape is a common morphology among bacteria, often associated with specific metabolic and ecological functions. Understanding the genomic structure, particularly the presence of a single replicon, suggests a streamlined genetic organization, which may contribute to the organism's adaptability in its native habitat. This trait can affect its replication and stability under various environmental conditions. The ecological insight into Sinomicrobium soli may be significant, particularly in its role within its ecosystem. While specific ecological interactions are not detailed in the provided information, the traits suggest that Sinomicrobium soli could participate in nutrient cycling or other microbial community dynamics, typical for many rod-shaped, Gram-negative bacteria in soil environments. Further research could elucidate its specific ecological niches and contributions.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusSinomicrobium
SpeciesSinomicrobium soli
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sinomicrobium sp. N-1-3-6 NODE_43_length_1230_cov_723.769, whole

Gene Summary

Adenine Count

1203595 bp

Thymine Count

1207869 bp

Guanine Count

1089866 bp

Cytosine Count

1109853 bp

Genome Length

4611183 bp

Protein-coding Genes

3695 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
adenylosuccinate lyaseDN748_16475Not AvailableNegative4026855 - 402743321966.0
nad-dependent deacylaseDN748_16480Not AvailableNegative4027430 - 402813425862.1
vapc toxin family pin domain ribonucleaseDN748_16485Not AvailablePositive4028640 - 402900513820.9
hypothetical proteinDN748_16490Not AvailablePositive4029026 - 402929210338.6
carboxypeptidase-like regulatory domain-containing proteinDN748_16495Not AvailableNegative4029341 - 403010828582.3
atp-dependent helicaseDN748_16500Not AvailableNegative4030420 - 403214164622.3
phosphoesteraseDN748_16505Not AvailablePositive4032549 - 403342732461.5
non-canonical purine ntp pyrophosphataseDN748_16510Not AvailableNegative4033463 - 403403521099.0
23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmhDN748_16515Not AvailableNegative4034067 - 403454017814.6
carboxylating nicotinate-nucleotide diphosphorylaseDN748_16520Not AvailablePositive4034755 - 403564532794.4

Displaying genes 3261 – 3270 of 3746 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.