Sinomicrobium soli

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Sinomicrobium

Description

Sinomicrobium soli is a Gram-negative, rod-shaped bacterium characterized by its single replicon. The organism has been cataloged under the accession number QLNV00000000.1, which provides a reference point for genetic and genomic studies. The Gram-negative classification indicates that Sinomicrobium soli possesses a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which can influence its interactions with the environment, including susceptibility to antibiotics and its overall ecological role. The rod shape is a common morphology among bacteria, often associated with specific metabolic and ecological functions. Understanding the genomic structure, particularly the presence of a single replicon, suggests a streamlined genetic organization, which may contribute to the organism's adaptability in its native habitat. This trait can affect its replication and stability under various environmental conditions. The ecological insight into Sinomicrobium soli may be significant, particularly in its role within its ecosystem. While specific ecological interactions are not detailed in the provided information, the traits suggest that Sinomicrobium soli could participate in nutrient cycling or other microbial community dynamics, typical for many rod-shaped, Gram-negative bacteria in soil environments. Further research could elucidate its specific ecological niches and contributions.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusSinomicrobium
SpeciesSinomicrobium soli
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sinomicrobium sp. N-1-3-6 NODE_43_length_1230_cov_723.769, whole

Gene Summary

Adenine Count

1203595 bp

Thymine Count

1207869 bp

Guanine Count

1089866 bp

Cytosine Count

1109853 bp

Genome Length

4611183 bp

Protein-coding Genes

3695 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
arginine--trna ligaseDN748_00585Not AvailableNegative129398 - 13117366565.6
hypothetical proteinDN748_00590Not AvailablePositive131249 - 13167416170.7
bile acid:sodium symporter family proteinDN748_00595Not AvailableNegative131743 - 13291242212.5
nuclear transport factor 2 family proteinDN748_00600Not AvailableNegative132869 - 13335718024.6
rraa family proteinDN748_00605Not AvailableNegative133524 - 13446235242.1
mandelate racemase/muconate lactonizing enzyme family proteinDN748_00610Not AvailableNegative134512 - 13601155797.6
susd/ragb family nutrient-binding outer membrane lipoproteinDN748_00615Not AvailableNegative136055 - 13757255544.6
susc/raga family tonb-linked outer membrane proteinDN748_00620Not AvailableNegative137585 - 141037127406.0
iron dicitrate transport regulator fecrDN748_00625Not AvailableNegative141336 - 14252344958.5
rna polymerase sigma-70 factorDN748_00630Not AvailableNegative142753 - 14328920608.1

Displaying genes 121 – 130 of 3746 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.