Sinomicrobium soli

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Sinomicrobium

Description

Sinomicrobium soli is a Gram-negative, rod-shaped bacterium characterized by its single replicon. The organism has been cataloged under the accession number QLNV00000000.1, which provides a reference point for genetic and genomic studies. The Gram-negative classification indicates that Sinomicrobium soli possesses a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which can influence its interactions with the environment, including susceptibility to antibiotics and its overall ecological role. The rod shape is a common morphology among bacteria, often associated with specific metabolic and ecological functions. Understanding the genomic structure, particularly the presence of a single replicon, suggests a streamlined genetic organization, which may contribute to the organism's adaptability in its native habitat. This trait can affect its replication and stability under various environmental conditions. The ecological insight into Sinomicrobium soli may be significant, particularly in its role within its ecosystem. While specific ecological interactions are not detailed in the provided information, the traits suggest that Sinomicrobium soli could participate in nutrient cycling or other microbial community dynamics, typical for many rod-shaped, Gram-negative bacteria in soil environments. Further research could elucidate its specific ecological niches and contributions.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusSinomicrobium
SpeciesSinomicrobium soli
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sinomicrobium sp. N-1-3-6 NODE_43_length_1230_cov_723.769, whole

Gene Summary

Adenine Count

1203595 bp

Thymine Count

1207869 bp

Guanine Count

1089866 bp

Cytosine Count

1109853 bp

Genome Length

4611183 bp

Protein-coding Genes

3695 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
thioredoxinDN748_05420Not AvailablePositive1329145 - 132945311407.5
hypothetical proteinDN748_05425Not AvailablePositive1329460 - 13297179588.54
thiol peroxidaseDN748_05430Not AvailablePositive1329963 - 133046317631.9
diacylglycerol kinase family proteinDN748_05435Not AvailablePositive1330641 - 133100012615.8
dna translocase ftskDN748_05440Not AvailablePositive1331117 - 133360391937.0
outer membrane lipoprotein carrier protein lolaDN748_05445Not AvailablePositive1333647 - 133430324972.5
permeaseDN748_05450Not AvailablePositive1334365 - 133583155221.7
3,4-dihydroxy-2-butanone-4-phosphate synthaseDN748_05455Not AvailablePositive1335919 - 133705241614.6
l-glutamine--2-deoxy-scyllo-inosose aminotransferase kanbDN748_05460Not AvailableNegative1337149 - 133834243796.4
nad(p)h-dependent oxidoreductaseDN748_05465Not AvailableNegative1338398 - 133903024291.5

Displaying genes 1081 – 1090 of 3746 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.