Pseudomonas sp. RW407

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. RW407 is characterized by having a single replicon, which is indicative of its genomic structure. The genome of this strain is accessible under the accession number QGSL00000000.1. This specific strain belongs to the genus Pseudomonas, known for its metabolic versatility and ability to thrive in diverse environments. Pseudomonas species are often recognized for their roles in bioremediation, as they can degrade various environmental pollutants. The traits of Pseudomonas sp. RW407 may contribute to its ecological role, particularly in nutrient cycling and organic matter decomposition. Understanding the genomic features of this strain could provide insights into its potential applications in environmental microbiology and biotechnology. In summary, Pseudomonas sp. RW407, with its single replicon and accessible genomic data, represents a valuable subject for further study in microbial ecology and bioremediation efforts. Its capabilities may play a significant role in addressing environmental challenges.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. RW407
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. RW407
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. RW407 NODE_384_LENGTH_323_COV_43.588234, whole

Gene Summary

Adenine Count

1199386 bp

Thymine Count

1192889 bp

Guanine Count

2469757 bp

Cytosine Count

2480675 bp

Genome Length

7346097 bp

Protein-coding Genes

6311 genes

Non-Coding Genes

292 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
multidrug/spermidine efflux smr transporter subunit mdtjDK254_25985Not AvailablePositive5695591 - 569595613095.5
multidrug/spermidine efflux smr transporter subunit mdtiDK254_25990Not AvailablePositive5695944 - 569627311731.9
gaba permeaseDK254_25995Not AvailableNegative5696551 - 569795150103.3
4-aminobutyrate--2-oxoglutarate transaminaseDK254_26000Not AvailableNegative5698096 - 569937044735.0
nadp-dependent succinate-semialdehyde dehydrogenase iDK254_26005Not AvailableNegative5699409 - 570085751698.1
l-2-hydroxyglutarate oxidaseDK254_26010Not AvailableNegative5700889 - 570215446119.0
carbon starvation induced protein csidDK254_26015Not AvailableNegative5702276 - 570325337269.6
dna-binding transcriptional regulator csirDK254_26020Not AvailablePositive5703414 - 570414827623.5
sam-dependent methyltransferaseDK254_26025Not AvailablePositive5704390 - 570543337558.6
arac family transcriptional regulatorDK254_26030Not AvailableNegative5705827 - 570684637935.3

Displaying genes 5101 – 5110 of 6603 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.