Pseudomonas sp. RW407

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. RW407 is characterized by having a single replicon, which is indicative of its genomic structure. The genome of this strain is accessible under the accession number QGSL00000000.1. This specific strain belongs to the genus Pseudomonas, known for its metabolic versatility and ability to thrive in diverse environments. Pseudomonas species are often recognized for their roles in bioremediation, as they can degrade various environmental pollutants. The traits of Pseudomonas sp. RW407 may contribute to its ecological role, particularly in nutrient cycling and organic matter decomposition. Understanding the genomic features of this strain could provide insights into its potential applications in environmental microbiology and biotechnology. In summary, Pseudomonas sp. RW407, with its single replicon and accessible genomic data, represents a valuable subject for further study in microbial ecology and bioremediation efforts. Its capabilities may play a significant role in addressing environmental challenges.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. RW407
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. RW407
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. RW407 NODE_384_LENGTH_323_COV_43.588234, whole

Gene Summary

Adenine Count

1199386 bp

Thymine Count

1192889 bp

Guanine Count

2469757 bp

Cytosine Count

2480675 bp

Genome Length

7346097 bp

Protein-coding Genes

6311 genes

Non-Coding Genes

292 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf2058 domain-containing proteinDK254_23200Not AvailableNegative5072648 - 507318720719.6
aspartyl beta-hydroxylaseDK254_23205Not AvailablePositive5073352 - 507428435775.5
gfo/idh/moca family oxidoreductaseDK254_23210Not AvailableNegative5074648 - 507570037623.2
iclr family transcriptional regulatorDK254_23215Not AvailableNegative5075900 - 507667627970.4
outer membrane porin, oprd familyDK254_23220Not AvailablePositive5077072 - 507832846290.2
lysr family transcriptional regulatorDK254_23225Not AvailableNegative5078678 - 507988343580.1
4-carboxy-2-hydroxymuconate hydrataseDK254_23230Not AvailablePositive5080040 - 508077427377.5
4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylaseDK254_23235Not AvailablePositive5080771 - 508149325381.8
4-oxalomesaconate tautomeraseDK254_23240Not AvailablePositive5081490 - 508256937963.7
abc transporter substrate-binding proteinDK254_23245Not AvailablePositive5082735 - 508366732942.9

Displaying genes 4571 – 4580 of 6603 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.