Pseudomonas sp. RIT411

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. RIT411 is a bacterial species characterized by a single replicon, indicating a streamlined genomic structure that may facilitate efficient replication and gene expression. This species is cataloged under the accession QBIZ00000000.2, which provides a reference point for researchers interested in its genetic and functional properties. Pseudomonas species are known for their versatility and ability to thrive in diverse environments, which can include soil, water, and even as plant pathogens. The single replicon of Pseudomonas sp. RIT411 may contribute to its adaptability and survival in various ecological niches. This trait suggests a potential for a specialized metabolic capability, which is often a hallmark of Pseudomonas species, enabling them to utilize a wide range of organic compounds. In ecological terms, the presence of Pseudomonas sp. RIT411 in its habitat may play a significant role in nutrient cycling and biodegradation processes. Pseudomonas species are frequently involved in the breakdown of organic pollutants, thus contributing to environmental bioremediation efforts. The genetic information encoded within its single replicon could provide insights into its metabolic pathways and ecological interactions. Understanding the traits of Pseudomonas sp. RIT411 may inform future research on its potential applications in biotechnology or environmental science, particularly in the context of bioremediation and sustainable practices. This emphasizes the importance of studying microbial diversity and the functional roles these organisms play in their ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. RIT411
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. RIT411
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. RIT411 37, whole genome shotgun sequence.

Gene Summary

Adenine Count

891683 bp

Thymine Count

894025 bp

Guanine Count

1743069 bp

Cytosine Count

1746801 bp

Genome Length

5275578 bp

Protein-coding Genes

4714 genes

Non-Coding Genes

188 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
diguanylate cyclaseDBY63_024125Not AvailablePositive5142202 - 514361752896.4
abc transporter atp-binding proteinDBY63_024130Not AvailablePositive5144328 - 514613966183.2
alpha,alpha-trehalase treaDBY63_024135Not AvailableNegative5146691 - 514833461014.8
hybrid sensor histidine kinase/response regulatorDBY63_024140Not AvailableNegative5148434 - 515034769526.5
exonuclease subunit sbccDBY63_024145Not AvailableNegative5150473 - 5153898126435.0
glutathione-dependent formaldehyde dehydrogenaseDBY63_024150Not AvailableNegative5154252 - 515542742467.8
duf2892 domain-containing proteinDBY63_024155Not AvailableNegative5155427 - 515626630183.1
exonuclease subunit sbcdDBY63_024160Not AvailableNegative5156367 - 515757243359.7
sn-glycerol-3-phosphate import atp-binding protein ugpcDBY63_024165Not AvailableNegative5157767 - 515884939301.9
sn-glycerol-3-phosphate abc transporter permease ugpeDBY63_024170Not AvailableNegative5158852 - 515969731301.4

Displaying genes 4791 – 4800 of 4902 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.