Ruminococcaceae bacterium R-25

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Description

Ruminococcaceae bacterium R-25 is characterized by having two replicons, which suggests a complex genomic structure potentially advantageous for its adaptability and function within its ecological niche. The organism is classified under the family Ruminococcaceae, known for its role in the fermentation of plant materials in the gut of herbivores. The genome of Ruminococcaceae bacterium R-25 is represented by two distinct accessions: QGFZ00000000.1 and UHJI00000000.1. These accessions provide a basis for understanding the genomic features and biological functions of the bacterium, although specific traits and functionalities associated with these sequences are not detailed in the provided data. Ruminococcaceae species are often associated with the degradation of complex carbohydrates, contributing to the digestion and fermentation processes in their hosts. This capability highlights the bacterium's potential role in nutrient cycling and its significance in the gut microbiome, particularly in herbivorous animals. Understanding the traits of Ruminococcaceae bacterium R-25 may offer insights into its ecological role in the digestive systems of herbivores, emphasizing the importance of microbial communities in nutrient assimilation and energy production from fibrous plant materials. The presence of multiple replicons may enhance its adaptability to fluctuating environmental conditions, further contributing to its ecological significance.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcaceae bacterium strain R-25 genome assembly, contig:

Gene Summary

Adenine Count

853217 bp

Thymine Count

838844 bp

Guanine Count

696180 bp

Cytosine Count

679320 bp

Genome Length

3067561 bp

Protein-coding Genes

2712 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
4-oxalocrotonate tautomerase family enzymeSAMN06297423_0072Not AvailablePositive89798 - 9015713601.5
uridine phosphorylaseSAMN06297423_0073Not AvailablePositive90159 - 9091728189.3
hypothetical proteinSAMN06297423_0074Not AvailablePositive90928 - 911558457.58
5-methyltetrahydrofolate--homocysteine methyltransferaseSAMN06297423_0075Not AvailableNegative91165 - 9356485871.6
vitamin b12 dependent methionine synthase, activation domainSAMN06297423_0076Not AvailableNegative93566 - 9424324675.6
5,10-methylenetetrahydrofolate reductase (nad(p))SAMN06297423_0077Not AvailableNegative94243 - 9510631300.7
iron complex transport system substrate-binding proteinSAMN06297423_0078Not AvailablePositive95249 - 9632537893.0
iron complex transport system permease proteinSAMN06297423_0079Not AvailablePositive96343 - 9737736623.5
iron complex transport system atp-binding proteinSAMN06297423_0080Not AvailablePositive97374 - 9813527789.6
cellulose binding domain-containing proteinSAMN06297423_0081Not AvailablePositive98312 - 10015967189.8

Displaying genes 71 – 80 of 5520 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.