Ruminococcaceae bacterium R-25

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Description

Ruminococcaceae bacterium R-25 is characterized by having two replicons, which suggests a complex genomic structure potentially advantageous for its adaptability and function within its ecological niche. The organism is classified under the family Ruminococcaceae, known for its role in the fermentation of plant materials in the gut of herbivores. The genome of Ruminococcaceae bacterium R-25 is represented by two distinct accessions: QGFZ00000000.1 and UHJI00000000.1. These accessions provide a basis for understanding the genomic features and biological functions of the bacterium, although specific traits and functionalities associated with these sequences are not detailed in the provided data. Ruminococcaceae species are often associated with the degradation of complex carbohydrates, contributing to the digestion and fermentation processes in their hosts. This capability highlights the bacterium's potential role in nutrient cycling and its significance in the gut microbiome, particularly in herbivorous animals. Understanding the traits of Ruminococcaceae bacterium R-25 may offer insights into its ecological role in the digestive systems of herbivores, emphasizing the importance of microbial communities in nutrient assimilation and energy production from fibrous plant materials. The presence of multiple replicons may enhance its adaptability to fluctuating environmental conditions, further contributing to its ecological significance.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcaceae bacterium strain R-25 genome assembly, contig:

Gene Summary

Adenine Count

853217 bp

Thymine Count

838844 bp

Guanine Count

696180 bp

Cytosine Count

679320 bp

Genome Length

3067561 bp

Protein-coding Genes

2712 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nadp-reducing hydrogenase subunit hndaB0O40_2531Not AvailablePositive2807013 - 280750117465.4
nad(p)-dependent iron-only hydrogenase diaphorase component flavoproteinB0O40_2532Not AvailablePositive2807498 - 280938167798.1
nad(p)-dependent iron-only hydrogenase catalytic subunitB0O40_2533Not AvailablePositive2809397 - 281117264580.4
diguanylate cyclase (ggdef)-like proteinB0O40_2534Not AvailablePositive2811367 - 281328972817.3
hypothetical proteinB0O40_2535Not AvailableNegative2813286 - 2816339112962.0
d-alanine-d-alanine ligaseB0O40_2536Not AvailablePositive2816493 - 281753338552.1
dcmp deaminaseB0O40_2537Not AvailablePositive2817629 - 281811417994.3
aryl-phospho-beta-d-glucosidase bglc (gh1 family)B0O40_2538Not AvailablePositive2818127 - 282021176767.5
hypothetical proteinB0O40_2539Not AvailablePositive2820213 - 282110933186.4
hypothetical proteinB0O40_2540Not AvailablePositive2821232 - 2825338143522.0

Displaying genes 5271 – 5280 of 5520 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.