Ruminococcaceae bacterium R-25

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Description

Ruminococcaceae bacterium R-25 is characterized by having two replicons, which suggests a complex genomic structure potentially advantageous for its adaptability and function within its ecological niche. The organism is classified under the family Ruminococcaceae, known for its role in the fermentation of plant materials in the gut of herbivores. The genome of Ruminococcaceae bacterium R-25 is represented by two distinct accessions: QGFZ00000000.1 and UHJI00000000.1. These accessions provide a basis for understanding the genomic features and biological functions of the bacterium, although specific traits and functionalities associated with these sequences are not detailed in the provided data. Ruminococcaceae species are often associated with the degradation of complex carbohydrates, contributing to the digestion and fermentation processes in their hosts. This capability highlights the bacterium's potential role in nutrient cycling and its significance in the gut microbiome, particularly in herbivorous animals. Understanding the traits of Ruminococcaceae bacterium R-25 may offer insights into its ecological role in the digestive systems of herbivores, emphasizing the importance of microbial communities in nutrient assimilation and energy production from fibrous plant materials. The presence of multiple replicons may enhance its adaptability to fluctuating environmental conditions, further contributing to its ecological significance.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcaceae bacterium strain R-25 genome assembly, contig:

Gene Summary

Adenine Count

853217 bp

Thymine Count

838844 bp

Guanine Count

696180 bp

Cytosine Count

679320 bp

Genome Length

3067561 bp

Protein-coding Genes

2712 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type iv pilus assembly protein pilcSAMN06297423_0042Not AvailableNegative46706 - 4790244122.7
hypothetical proteinSAMN06297423_0043Not AvailableNegative47929 - 4842318568.9
hypothetical proteinSAMN06297423_0044Not AvailablePositive48874 - 4932916918.2
hypothetical proteinSAMN06297423_0045Not AvailablePositive49326 - 4967612951.3
hypothetical proteinSAMN06297423_0046Not AvailablePositive49681 - 5045728939.4
prepilin-type n-terminal cleavage/methylation domain-containing proteinSAMN06297423_0047Not AvailablePositive50719 - 57051221763.0
listeria/bacterioides repeat-containing proteinSAMN06297423_0048Not AvailablePositive57070 - 59946103908.0
prepilin-type n-terminal cleavage/methylation domain-containing proteinSAMN06297423_0049Not AvailablePositive60279 - 6077317454.8
leader peptidase (prepilin peptidase) / n-methyltransferaseSAMN06297423_0050Not AvailablePositive60944 - 6172928126.8
hypothetical proteinSAMN06297423_0051Not AvailablePositive61736 - 6310652500.4

Displaying genes 41 – 50 of 5520 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.